Jatropha Genome Database

JcCB0003511.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0003511.10 - phase: 0 
         (277 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma02g13120.1                                                       100   2e-21
Glyma01g07390.1                                                        97   3e-20
Glyma08g27010.1                                                        54   3e-07
Glyma18g50240.1                                                        50   2e-06

>Glyma02g13120.1 
          Length = 381

 Score =  100 bits (249), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 54/88 (61%), Positives = 63/88 (71%), Gaps = 2/88 (2%)

Query: 61  LNLGLSLGGRFGVDKSAKK--LTRSSSIAGSIPLAREHDAFNTPPLSYPVLMRTSSLPXX 118
           LNLGLSLGGRFGVDK+AKK  L RSSS+ G++PL RE DA      ++P LMRTSSLP  
Sbjct: 64  LNLGLSLGGRFGVDKNAKKKKLLRSSSVVGTMPLFREDDAVAPSAAAFPALMRTSSLPTE 123

Query: 119 XXXXXXXXXXMQSLRRLEAKRRRSEKQK 146
                     MQ+LRR+EAKRRRSEKQ+
Sbjct: 124 TEEEWRRRKEMQTLRRMEAKRRRSEKQR 151


>Glyma01g07390.1 
          Length = 407

 Score = 96.7 bits (239), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 52/87 (59%), Positives = 62/87 (71%), Gaps = 2/87 (2%)

Query: 62  NLGLSLGGRFGVDKSAKK--LTRSSSIAGSIPLAREHDAFNTPPLSYPVLMRTSSLPXXX 119
           NLGLSLGGRFGVDK+AKK  L RSSS+ G++PL R+ DA      ++P LMRTSSLP   
Sbjct: 93  NLGLSLGGRFGVDKNAKKKRLLRSSSVVGTMPLFRQDDAVAPSAAAFPALMRTSSLPTET 152

Query: 120 XXXXXXXXXMQSLRRLEAKRRRSEKQK 146
                    MQ+LRR+EAKRRRSEKQ+
Sbjct: 153 EEEWRRRKEMQTLRRMEAKRRRSEKQR 179


>Glyma08g27010.1 
          Length = 383

 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/132 (34%), Positives = 65/132 (49%), Gaps = 16/132 (12%)

Query: 27  INRYPRDLLQRFMSTETQQQKT-----------PSSXXXXXXXXXLNLGLSLGGRFGVDK 75
           +N +PRDLL+ FM                    P           L+L LS+ GRFGVD 
Sbjct: 28  MNNFPRDLLRTFMGVNNNNNNNNNSNNNNHHNLPMPVVKLEEELELSLDLSMNGRFGVDP 87

Query: 76  SAKKLTRSSSIAGSIPLAREHD-AFNTPPLSYPVLMRTSSLPXXXXXXXXXXXXMQSLRR 134
           +AKK+ R++SI      A + +  F T   +   L+RT SLP            +Q+LRR
Sbjct: 88  TAKKIKRTTSIP---EFASDKEMGFATVGCTG-SLVRTCSLPTETEEEWRKRKELQTLRR 143

Query: 135 LEAKRRRSEKQK 146
           +EA+R+RSEKQ+
Sbjct: 144 MEARRKRSEKQR 155


>Glyma18g50240.1 
          Length = 377

 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 45/80 (56%), Gaps = 2/80 (2%)

Query: 67  LGGRFGVDKSAKKLTRSSSIAGSIPLAREHDAFNTPPLSYPVLMRTSSLPXXXXXXXXXX 126
           + GRFGVD +AKK+ R++SI   +    E   +         L+RT SLP          
Sbjct: 76  MNGRFGVDPTAKKIKRTTSIPEFV--RDEEMGYAAAMGCTGSLVRTCSLPTETEEEWRKR 133

Query: 127 XXMQSLRRLEAKRRRSEKQK 146
             +Q+LRR+EA+R+RSEKQ+
Sbjct: 134 KELQTLRRVEARRKRSEKQR 153