Jatropha Genome Database

JcCB0003421.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0003421.20 + phase: 1 /TE/pseudo/partial
         (383 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma12g18250.1                                                        49   8e-06

>Glyma12g18250.1 
          Length = 946

 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 7/78 (8%)

Query: 309 MSTSSKWVTDSACTDHMTGNSSLFSSL---KEPHNSNRHVTLADGSTSSIKSIGTVDPNC 365
           + + S W+ DS  +DH++GN S FSS+   K PH     VT+A+GS  + +  G V  + 
Sbjct: 732 IGSPSPWILDSGASDHISGNKSFFSSIFFPKIPH----LVTVANGSKVASQGSGQVSLSP 787

Query: 366 LPSSSVLCLPCFSFNLLS 383
           L  +SVL +P   +NL+S
Sbjct: 788 LKLNSVLFVPQCPYNLIS 805