Jatropha Genome Database

JcCB0002291.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0002291.10 - phase: 0 /partial
         (187 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma01g34980.1                                                       136   1e-32
Glyma08g03930.1                                                        92   2e-19
Glyma09g32710.1                                                        68   7e-12
Glyma08g39270.1                                                        65   6e-11
Glyma09g24330.1                                                        50   1e-06

>Glyma01g34980.1 
          Length = 691

 Score =  136 bits (342), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 78/180 (43%), Positives = 107/180 (59%), Gaps = 17/180 (9%)

Query: 8   VQFPIFSPLLNPNPIQNPSQRPLFEVHFSRWNNANARKFNEQRRAQKEIEDDIRRQRRFD 67
           +Q PIFSP + PNP ++   R   E+ FSRWNNANA KFN +RR  +EIED+I R RRF 
Sbjct: 9   IQLPIFSPPVCPNPTRD---RCSTELRFSRWNNANAEKFNRRRRTIQEIEDEICRTRRFT 65

Query: 68  SATNIVQNYDSATKTTSTETFKXXXXXXXXXXXXXXXRKSKYSKPKTHPAFRRVSTRITQ 127
           +A NI     +A    + ETFK                 S+ S P     + +   +   
Sbjct: 66  AADNITNTAFAADSAAAAETFKSLGTPSAP---------SQPSIPGKKSKYSKPPPKPKP 116

Query: 128 PKDDESPIERNANIKLSEDGLSYVVNGAPFEFKYSYTESPKVKPLKLREPPFSPFGPTTM 187
             D   P+    N+++ +DG+SYVV+GAPFEF++SYTE+P  KP+KLREPPF+PFGP ++
Sbjct: 117 LLDSH-PV----NVRIGDDGVSYVVDGAPFEFRFSYTETPNAKPVKLREPPFAPFGPASL 171


>Glyma08g03930.1 
          Length = 595

 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 44/75 (58%), Positives = 58/75 (77%), Gaps = 3/75 (4%)

Query: 113 KTHPAFRRVSTRITQPKDDESPIERNANIKLSEDGLSYVVNGAPFEFKYSYTESPKVKPL 172
           ++HPAFR  +   ++P+      E   N+K+S+DGLSYV++GAPFEFKYSYTE+PKVKP+
Sbjct: 9   QSHPAFRFSNIPKSKPQRVSGAPE---NVKISDDGLSYVIDGAPFEFKYSYTETPKVKPI 65

Query: 173 KLREPPFSPFGPTTM 187
           K+RE PF PFGP TM
Sbjct: 66  KMREAPFVPFGPDTM 80


>Glyma09g32710.1 
          Length = 246

 Score = 67.8 bits (164), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 34/65 (52%), Positives = 44/65 (67%), Gaps = 3/65 (4%)

Query: 8  VQFPIFSPLLNPNPIQNPSQRPLFEVHFSRWNNANARKFNEQRRAQKEIEDDIRRQRRFD 67
          +Q PIFSP +NPNP +   +R   E+ FSRWNNANA KFN +RR  +EIED+    RRF 
Sbjct: 5  IQLPIFSPPVNPNPTR---ERSSTELRFSRWNNANADKFNRRRRTLQEIEDETCHTRRFT 61

Query: 68 SATNI 72
          +  N+
Sbjct: 62 AVDNV 66


>Glyma08g39270.1 
          Length = 593

 Score = 64.7 bits (156), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 49/85 (57%), Gaps = 16/85 (18%)

Query: 105 RKSKYSKPKTHPAFRRVSTRITQPKDDESPIERNAN--IKLSEDGLSYVVNGAPFEFKYS 162
           R+SKY +P               P+D        A+  + + E G+SY++ GAPFEF++S
Sbjct: 64  RRSKYHRP--------------VPRDGGIIASDGADRAVVIGESGVSYLLPGAPFEFQFS 109

Query: 163 YTESPKVKPLKLREPPFSPFGPTTM 187
           Y+E+PK KP+ +REP F PF P TM
Sbjct: 110 YSETPKAKPIAIREPAFLPFAPPTM 134


>Glyma09g24330.1 
          Length = 114

 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 35/53 (66%)

Query: 135 IERNANIKLSEDGLSYVVNGAPFEFKYSYTESPKVKPLKLREPPFSPFGPTTM 187
           + R+  I + + G+ Y++  APFEF++ Y+++ KVKP+ + E  F PF P TM
Sbjct: 45  VPRDGGIVIGDSGVLYLLPTAPFEFQFDYSKTSKVKPIAIHELSFPPFVPPTM 97