Jatropha Genome Database

JcCB0001721.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0001721.30 + phase: 0 
         (74 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma02g08880.1                                                       129   8e-31
Glyma16g27980.1                                                       126   5e-30

>Glyma02g08880.1 
          Length = 480

 Score =  129 bits (324), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 58/71 (81%), Positives = 63/71 (88%)

Query: 4  ETVNNVMCQLKDREGTALGAPLYLPQNAGPQQLMQIVNKLLNNEEKLPYSFYISDQELLV 63
          E +NNVMC L D +GT LGAP+YLPQNAGPQ L+QIVNKLLNNEEKLPYSFYISD+ELLV
Sbjct: 13 EIINNVMCLLTDPDGTPLGAPMYLPQNAGPQHLIQIVNKLLNNEEKLPYSFYISDEELLV 72

Query: 64 PLETYLQKNKG 74
          PLETYL KNK 
Sbjct: 73 PLETYLLKNKA 83


>Glyma16g27980.1 
          Length = 480

 Score =  126 bits (316), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 56/70 (80%), Positives = 62/70 (88%)

Query: 4  ETVNNVMCQLKDREGTALGAPLYLPQNAGPQQLMQIVNKLLNNEEKLPYSFYISDQELLV 63
          E +NNVMC L D +GT  GAP+YLPQNAGPQ L QIVNKLLNNEEKLPY+FYIS++ELLV
Sbjct: 13 EIINNVMCLLTDPDGTPFGAPMYLPQNAGPQHLNQIVNKLLNNEEKLPYAFYISNEELLV 72

Query: 64 PLETYLQKNK 73
          PLETYLQKNK
Sbjct: 73 PLETYLQKNK 82