Jatropha Genome Database

JcCB0001101.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0001101.20 + phase: 0 
         (78 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma02g40430.2                                                        93   6e-20
Glyma14g38720.1                                                        93   6e-20
Glyma02g40430.1                                                        93   7e-20

>Glyma02g40430.2 
          Length = 67

 Score = 93.2 bits (230), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 44/51 (86%), Positives = 47/51 (92%)

Query: 1  MGKQPVRMKAVVYALSPFQQKIMPGLWKDLPNKIHHKVSENWISATLLLTP 51
          MGKQ V +K+V+YALSPFQQKIMPGLWKDLP KIHHKVSENWISATLLL P
Sbjct: 1  MGKQIVPVKSVIYALSPFQQKIMPGLWKDLPTKIHHKVSENWISATLLLGP 51


>Glyma14g38720.1 
          Length = 72

 Score = 93.2 bits (230), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 44/51 (86%), Positives = 47/51 (92%)

Query: 1  MGKQPVRMKAVVYALSPFQQKIMPGLWKDLPNKIHHKVSENWISATLLLTP 51
          MGKQ V +K+V+YALSPFQQKIMPGLWKDLP KIHHKVSENWISATLLL P
Sbjct: 1  MGKQVVPVKSVIYALSPFQQKIMPGLWKDLPTKIHHKVSENWISATLLLGP 51


>Glyma02g40430.1 
          Length = 72

 Score = 92.8 bits (229), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 44/51 (86%), Positives = 47/51 (92%)

Query: 1  MGKQPVRMKAVVYALSPFQQKIMPGLWKDLPNKIHHKVSENWISATLLLTP 51
          MGKQ V +K+V+YALSPFQQKIMPGLWKDLP KIHHKVSENWISATLLL P
Sbjct: 1  MGKQIVPVKSVIYALSPFQQKIMPGLWKDLPTKIHHKVSENWISATLLLGP 51