Jatropha Genome Database

JcCB0000571.50
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0000571.50 - phase: 0 /pseudo/partial
         (181 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma10g36430.1                                                        60   1e-09
Glyma10g34340.1                                                        48   5e-06

>Glyma10g36430.1 
          Length = 343

 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 61/140 (43%), Gaps = 7/140 (5%)

Query: 7   PG-FVNGAMHWITYKSKNNNEREFFIMVFDLRDEVFGEIMLPQSLVISSCDFKVHVFGES 65
           PG FV+G ++WI  +  NN++++  I+ FDL  E +GE++LP       C   + V  + 
Sbjct: 187 PGKFVSGTLNWIAKRDLNNDDQQRMILSFDLATETYGEVLLPDGDHDKICSPTLDVLRDC 246

Query: 66  SITVIHKKDKKMSVVCVMKNYGVVASWVMLGTVGK------DWRGKLRVLGFMSNGDVFL 119
                    K   +V +MK YGV  SW  L T+         W      L    NG + L
Sbjct: 247 LCVCFSDCRKGHWIVWLMKEYGVPNSWTKLVTIPYIKLGICRWSHLFVPLCISENGVLLL 306

Query: 120 QFHRGGIASQNIESRRLKNL 139
           +     +   N+   R+  L
Sbjct: 307 KTTSSKLVIYNLNDGRMDYL 326


>Glyma10g34340.1 
          Length = 386

 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 7/91 (7%)

Query: 8   GFVNGAMHWITYKSKNNNEREFFIMVFDLRDEVFGEIMLPQSLV----ISSCDFKVHVFG 63
           GF +G +HW+  K    +   +F++ F L DE+FGE+MLP SL     ++     V    
Sbjct: 202 GFEDGLVHWVA-KRDVTHAWYYFLLTFRLEDEMFGEVMLPGSLAHVSSVAVVVKVVGGGN 260

Query: 64  ESSITVIHKKD--KKMSVVCVMKNYGVVASW 92
             ++TV H          + VMK YGVV SW
Sbjct: 261 GKTLTVYHVSACYPCSCEIWVMKEYGVVESW 291