Jatropha Genome Database

JcCA0317741.40
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0317741.40 - phase: 0 /partial
         (65 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma04g01560.1                                                       116   4e-27
Glyma06g01640.1                                                       115   8e-27
Glyma16g21840.1                                                       111   1e-25
Glyma16g21840.2                                                       111   1e-25
Glyma09g32820.1                                                       110   3e-25
Glyma11g09370.1                                                       108   1e-24

>Glyma04g01560.1 
          Length = 451

 Score =  116 bits (291), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 55/64 (85%), Positives = 60/64 (93%)

Query: 1   VRVQSDPAGRLVITGQPEQLDNPWGITPFKKVVSLPSRIDPLQTSAVVSLHGRLYVRVPF 60
           VRVQSDP GRLVITG PE LDNPWGITPFKKVV+LP+RID LQTSAVVSLHGRL+VRVPF
Sbjct: 387 VRVQSDPVGRLVITGVPEHLDNPWGITPFKKVVNLPTRIDSLQTSAVVSLHGRLFVRVPF 446

Query: 61  ERGS 64
           E+G+
Sbjct: 447 EQGA 450


>Glyma06g01640.1 
          Length = 391

 Score =  115 bits (289), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 54/64 (84%), Positives = 60/64 (93%)

Query: 1   VRVQSDPAGRLVITGQPEQLDNPWGITPFKKVVSLPSRIDPLQTSAVVSLHGRLYVRVPF 60
           VRVQSDP GRLVITG PE +DNPWGITPFKKVV+LP+RID LQTSAVVSLHGRL+VRVPF
Sbjct: 327 VRVQSDPVGRLVITGVPEHIDNPWGITPFKKVVNLPARIDSLQTSAVVSLHGRLFVRVPF 386

Query: 61  ERGS 64
           E+G+
Sbjct: 387 EQGA 390


>Glyma16g21840.1 
          Length = 512

 Score =  111 bits (278), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 51/61 (83%), Positives = 57/61 (93%)

Query: 1   VRVQSDPAGRLVITGQPEQLDNPWGITPFKKVVSLPSRIDPLQTSAVVSLHGRLYVRVPF 60
           VRVQSDPAGRLVI+G+PE  DNPWG+TPFKKVVSLPSRID  QTSAVV+LHG+L+VRVPF
Sbjct: 445 VRVQSDPAGRLVISGEPEHSDNPWGVTPFKKVVSLPSRIDTQQTSAVVTLHGQLFVRVPF 504

Query: 61  E 61
           E
Sbjct: 505 E 505


>Glyma16g21840.2 
          Length = 508

 Score =  111 bits (278), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 51/61 (83%), Positives = 57/61 (93%)

Query: 1   VRVQSDPAGRLVITGQPEQLDNPWGITPFKKVVSLPSRIDPLQTSAVVSLHGRLYVRVPF 60
           VRVQSDPAGRLVI+G+PE  DNPWG+TPFKKVVSLPSRID  QTSAVV+LHG+L+VRVPF
Sbjct: 441 VRVQSDPAGRLVISGEPEHSDNPWGVTPFKKVVSLPSRIDTQQTSAVVTLHGQLFVRVPF 500

Query: 61  E 61
           E
Sbjct: 501 E 501


>Glyma09g32820.1 
          Length = 466

 Score =  110 bits (275), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 51/61 (83%), Positives = 57/61 (93%)

Query: 1   VRVQSDPAGRLVITGQPEQLDNPWGITPFKKVVSLPSRIDPLQTSAVVSLHGRLYVRVPF 60
           VRVQSDPAGRLVI+G+PE  DNPWG+TPFKKVVSLPSRID  QTSAVV+LHG+L+VRVPF
Sbjct: 399 VRVQSDPAGRLVISGEPENSDNPWGVTPFKKVVSLPSRIDTQQTSAVVTLHGQLFVRVPF 458

Query: 61  E 61
           E
Sbjct: 459 E 459


>Glyma11g09370.1 
          Length = 528

 Score =  108 bits (271), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 51/61 (83%), Positives = 58/61 (95%)

Query: 1   VRVQSDPAGRLVITGQPEQLDNPWGITPFKKVVSLPSRIDPLQTSAVVSLHGRLYVRVPF 60
           VRVQSDPAGRLVI+G+PE  +NPWG+TPFKKVVSLPSRIDP QTSAVV+LHG+L+VRVPF
Sbjct: 465 VRVQSDPAGRLVISGEPEHPNNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPF 524

Query: 61  E 61
           E
Sbjct: 525 E 525