Jatropha Genome Database

JcCA0317741.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0317741.20 + phase: 0 
         (96 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma04g01580.4                                                       157   2e-39
Glyma04g01580.3                                                       157   2e-39
Glyma04g01580.2                                                       157   2e-39
Glyma04g01580.1                                                       157   2e-39
Glyma06g01660.2                                                       136   5e-33
Glyma06g01660.1                                                       136   5e-33

>Glyma04g01580.4 
          Length = 100

 Score =  157 bits (398), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 75/94 (79%), Positives = 81/94 (86%), Gaps = 2/94 (2%)

Query: 1  MSSNWRRTLGNVRSFIGNSMGGLRGGSNLASWVVAGTLAYFLWVKPSQDLKREQQERX-- 58
          M+S+WRRT GN+RSF+ NSMGGLRGGSNLASWVVAGTLAYFLW+KPSQDLKREQQE+   
Sbjct: 1  MASSWRRTFGNMRSFVSNSMGGLRGGSNLASWVVAGTLAYFLWIKPSQDLKREQQEKAAL 60

Query: 59 XXXXXDPYRYVEKRKPIPDPQETGLIYGNKNKTK 92
               DPYRYVE RKPIPDPQ TGLIYGNKNK K
Sbjct: 61 AAAESDPYRYVETRKPIPDPQVTGLIYGNKNKDK 94


>Glyma04g01580.3 
          Length = 100

 Score =  157 bits (398), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 75/94 (79%), Positives = 81/94 (86%), Gaps = 2/94 (2%)

Query: 1  MSSNWRRTLGNVRSFIGNSMGGLRGGSNLASWVVAGTLAYFLWVKPSQDLKREQQERX-- 58
          M+S+WRRT GN+RSF+ NSMGGLRGGSNLASWVVAGTLAYFLW+KPSQDLKREQQE+   
Sbjct: 1  MASSWRRTFGNMRSFVSNSMGGLRGGSNLASWVVAGTLAYFLWIKPSQDLKREQQEKAAL 60

Query: 59 XXXXXDPYRYVEKRKPIPDPQETGLIYGNKNKTK 92
               DPYRYVE RKPIPDPQ TGLIYGNKNK K
Sbjct: 61 AAAESDPYRYVETRKPIPDPQVTGLIYGNKNKDK 94


>Glyma04g01580.2 
          Length = 100

 Score =  157 bits (398), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 75/94 (79%), Positives = 81/94 (86%), Gaps = 2/94 (2%)

Query: 1  MSSNWRRTLGNVRSFIGNSMGGLRGGSNLASWVVAGTLAYFLWVKPSQDLKREQQERX-- 58
          M+S+WRRT GN+RSF+ NSMGGLRGGSNLASWVVAGTLAYFLW+KPSQDLKREQQE+   
Sbjct: 1  MASSWRRTFGNMRSFVSNSMGGLRGGSNLASWVVAGTLAYFLWIKPSQDLKREQQEKAAL 60

Query: 59 XXXXXDPYRYVEKRKPIPDPQETGLIYGNKNKTK 92
               DPYRYVE RKPIPDPQ TGLIYGNKNK K
Sbjct: 61 AAAESDPYRYVETRKPIPDPQVTGLIYGNKNKDK 94


>Glyma04g01580.1 
          Length = 100

 Score =  157 bits (398), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 75/94 (79%), Positives = 81/94 (86%), Gaps = 2/94 (2%)

Query: 1  MSSNWRRTLGNVRSFIGNSMGGLRGGSNLASWVVAGTLAYFLWVKPSQDLKREQQERX-- 58
          M+S+WRRT GN+RSF+ NSMGGLRGGSNLASWVVAGTLAYFLW+KPSQDLKREQQE+   
Sbjct: 1  MASSWRRTFGNMRSFVSNSMGGLRGGSNLASWVVAGTLAYFLWIKPSQDLKREQQEKAAL 60

Query: 59 XXXXXDPYRYVEKRKPIPDPQETGLIYGNKNKTK 92
               DPYRYVE RKPIPDPQ TGLIYGNKNK K
Sbjct: 61 AAAESDPYRYVETRKPIPDPQVTGLIYGNKNKDK 94


>Glyma06g01660.2 
          Length = 95

 Score =  136 bits (343), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 66/92 (71%), Positives = 74/92 (80%), Gaps = 3/92 (3%)

Query: 1  MSSNWRRTLGNVRSFIGNSMGGLRGGSNLASWVVAGTLAYFLWVKPSQDLKREQQERXXX 60
          M+S+ RRT GN+RSF+ NSMGGLRGGSNLASWVVAGTLAYFLW+KPSQD KR+QQE+   
Sbjct: 1  MASSRRRTFGNMRSFVSNSMGGLRGGSNLASWVVAGTLAYFLWIKPSQDFKRQQQEKATL 60

Query: 61 XXXDPYRYVEKRKPIPDPQETGLIYGNKNKTK 92
             +   Y   RKPIPDPQ TGLIYGNKNK K
Sbjct: 61 AAAESDSY---RKPIPDPQVTGLIYGNKNKDK 89


>Glyma06g01660.1 
          Length = 95

 Score =  136 bits (343), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 66/92 (71%), Positives = 74/92 (80%), Gaps = 3/92 (3%)

Query: 1  MSSNWRRTLGNVRSFIGNSMGGLRGGSNLASWVVAGTLAYFLWVKPSQDLKREQQERXXX 60
          M+S+ RRT GN+RSF+ NSMGGLRGGSNLASWVVAGTLAYFLW+KPSQD KR+QQE+   
Sbjct: 1  MASSRRRTFGNMRSFVSNSMGGLRGGSNLASWVVAGTLAYFLWIKPSQDFKRQQQEKATL 60

Query: 61 XXXDPYRYVEKRKPIPDPQETGLIYGNKNKTK 92
             +   Y   RKPIPDPQ TGLIYGNKNK K
Sbjct: 61 AAAESDSY---RKPIPDPQVTGLIYGNKNKDK 89