Jatropha Genome Database

JcCA0317621.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0317621.20 + phase: 0 /partial
         (271 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma04g35820.3                                                       296   1e-80
Glyma04g35820.1                                                       295   3e-80
Glyma04g35820.2                                                       215   4e-56
Glyma04g35800.1                                                        76   4e-14

>Glyma04g35820.3 
          Length = 399

 Score =  296 bits (759), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 171/271 (63%), Positives = 201/271 (74%), Gaps = 17/271 (6%)

Query: 1   MALAFAFSSLYSYQPKIHISSSINRRPLSPIYQFREFNCSVFAAEKNGSSSSRKSTTFVT 60
           MA A A  S   + P++  SSS       PI + R F+  +        S     T   +
Sbjct: 1   MAQAHALFS--PFNPRLLPSSS-------PILRRRFFSLPI--------SPLTHRTVIAS 43

Query: 61  ALSCVREKSSTPTTAFNELIESLISRVDLTESEAETSLYYLLNDGNEALISAFLVLLRAK 120
               V   +++ T +  ++IE+LIS VDL+E EAE  L  LL++ NEALISA LVLLRAK
Sbjct: 44  ENVAVSPDAASSTHSLPQVIETLISGVDLSEEEAEACLNLLLHEPNEALISALLVLLRAK 103

Query: 121 GETFEEIVGLARAMIKHARTVEGLVDAVDIVGTGGDGANTVNISTGASILAAACGTKVAK 180
           GET+EE+VGLARAM KHA  VEGL D VDIVGTGGDGANTVNISTGASILAAACG +VAK
Sbjct: 104 GETYEEVVGLARAMFKHATKVEGLDDVVDIVGTGGDGANTVNISTGASILAAACGARVAK 163

Query: 181 QGNRSSSSACGSADVLEALGIIIDLDPEGVSKCVNEAGIGFMMSPKYHPAMKIVSPVRKK 240
           QG+RSSSSACGSADVLEALG++IDL P+GV +CV+EAG+GFMMS KYHP+MKIV PVRKK
Sbjct: 164 QGSRSSSSACGSADVLEALGVVIDLGPQGVKRCVDEAGMGFMMSTKYHPSMKIVRPVRKK 223

Query: 241 LKVKTVFNILGPMLNPARVPFAVVGVYKEDL 271
           LK+KT+FNILGPMLNPA  PFAVVGVY EDL
Sbjct: 224 LKIKTIFNILGPMLNPAHAPFAVVGVYTEDL 254


>Glyma04g35820.1 
          Length = 400

 Score =  295 bits (756), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 176/277 (63%), Positives = 204/277 (73%), Gaps = 28/277 (10%)

Query: 1   MALAFAFSSLYSYQPKIHISSS--INRR----PLSPIYQFREFNCSVFAAEKNGSSSSRK 54
           MA A A  S   + P++  SSS  + RR    P+SP+        +V A+E    S    
Sbjct: 1   MAQAHALFS--PFNPRLLPSSSPILRRRFFSLPISPLTHR-----TVIASENVAVSPDAA 53

Query: 55  STTFVTALSCVREKSSTPTTAFNELIESLISRVDLTESEAETSLYYLLNDGNEALISAFL 114
           S+T            S P     ++IE+LIS VDL+E EAE  L  LL++ NEALISA L
Sbjct: 54  SSTH-----------SLP----QQVIETLISGVDLSEEEAEACLNLLLHEPNEALISALL 98

Query: 115 VLLRAKGETFEEIVGLARAMIKHARTVEGLVDAVDIVGTGGDGANTVNISTGASILAAAC 174
           VLLRAKGET+EE+VGLARAM KHA  VEGL D VDIVGTGGDGANTVNISTGASILAAAC
Sbjct: 99  VLLRAKGETYEEVVGLARAMFKHATKVEGLDDVVDIVGTGGDGANTVNISTGASILAAAC 158

Query: 175 GTKVAKQGNRSSSSACGSADVLEALGIIIDLDPEGVSKCVNEAGIGFMMSPKYHPAMKIV 234
           G +VAKQG+RSSSSACGSADVLEALG++IDL P+GV +CV+EAG+GFMMS KYHP+MKIV
Sbjct: 159 GARVAKQGSRSSSSACGSADVLEALGVVIDLGPQGVKRCVDEAGMGFMMSTKYHPSMKIV 218

Query: 235 SPVRKKLKVKTVFNILGPMLNPARVPFAVVGVYKEDL 271
            PVRKKLK+KT+FNILGPMLNPA  PFAVVGVY EDL
Sbjct: 219 RPVRKKLKIKTIFNILGPMLNPAHAPFAVVGVYTEDL 255


>Glyma04g35820.2 
          Length = 283

 Score =  215 bits (548), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 114/138 (82%), Positives = 125/138 (90%)

Query: 134 MIKHARTVEGLVDAVDIVGTGGDGANTVNISTGASILAAACGTKVAKQGNRSSSSACGSA 193
           M KHA  VEGL D VDIVGTGGDGANTVNISTGASILAAACG +VAKQG+RSSSSACGSA
Sbjct: 1   MFKHATKVEGLDDVVDIVGTGGDGANTVNISTGASILAAACGARVAKQGSRSSSSACGSA 60

Query: 194 DVLEALGIIIDLDPEGVSKCVNEAGIGFMMSPKYHPAMKIVSPVRKKLKVKTVFNILGPM 253
           DVLEALG++IDL P+GV +CV+EAG+GFMMS KYHP+MKIV PVRKKLK+KT+FNILGPM
Sbjct: 61  DVLEALGVVIDLGPQGVKRCVDEAGMGFMMSTKYHPSMKIVRPVRKKLKIKTIFNILGPM 120

Query: 254 LNPARVPFAVVGVYKEDL 271
           LNPA  PFAVVGVY EDL
Sbjct: 121 LNPAHAPFAVVGVYTEDL 138


>Glyma04g35800.1 
          Length = 172

 Score = 75.9 bits (185), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 55/134 (41%), Positives = 76/134 (56%), Gaps = 12/134 (8%)

Query: 90  TESEAETSLYYLLNDGNEALISAFLVLLRAKGETFEEI---VGLARAMIK---HARTVEG 143
           +E EAE  L  LL++ NEALISA LVLLRAK ET+EE+   VG   A  +     R    
Sbjct: 1   SEEEAEACLDLLLHEPNEALISALLVLLRAKEETYEEVSCRVGEGNAETRDKGRERVWTM 60

Query: 144 LVDAVDIVGTGGDGANTVNISTGASILAAACGTKVAKQGNRSSSSACGSAD-VLEALGII 202
            + + +  GT     +T  +    S+       + ++ G R SSSACGSAD VLEALG++
Sbjct: 61  WLTSWEPEGTVPTTRSTFRLVLRFSLRLVVAELQRSR-GKRLSSSACGSADVVLEALGVV 119

Query: 203 IDLDPEGVSKCVNE 216
           +DL P+    C++E
Sbjct: 120 MDLGPQ----CIDE 129