Jatropha Genome Database

JcCA0317211.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0317211.20 + phase: 0 /pseudo
         (243 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma02g03000.1                                                       197   8e-51
Glyma01g04560.1                                                       194   6e-50

>Glyma02g03000.1 
          Length = 219

 Score =  197 bits (501), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 112/213 (52%), Positives = 136/213 (63%), Gaps = 32/213 (15%)

Query: 30  SDQTTNG-GSGSRVLLVFKEKPEGSNLTFDCSPSGACVPCQYSEKTDEKYRCSETGYRIP 88
           S++T +G G   RVLL FKEKP GSN+TF+C+PSG CVPC YSEK DEKYRCSETGYRIP
Sbjct: 34  SEETQHGNGVRRRVLLSFKEKPSGSNVTFECTPSGPCVPCLYSEKGDEKYRCSETGYRIP 93

Query: 89  LKCIETKDNIKNGNDKKSQKTRSVIEISNENANPHAMLHDAA----SNEQRSLLDDSSTL 144
            KC+E KD+ K+    KSQK R  +EIS+  A  H + HDA     S   R L+DDSS+ 
Sbjct: 94  FKCLEIKDSTKDAKKTKSQKGRLSLEISDGIAESHKVSHDAGEINPSQSHRRLVDDSSSS 153

Query: 145 EDGSQAYITYRSCIPPVNEEKLSVLGFEAFCEIAVFKNCLTECGYXCLAVNHDAQGIILC 204
           ++ SQAYITYRSCI PVNEEKLSVL FE                           G+++ 
Sbjct: 154 DNSSQAYITYRSCITPVNEEKLSVLNFE---------------------------GVVIF 186

Query: 205 LFLISGSVVYFRRKQTVTMSGVGGGRIQMNSRF 237
             LISGS++Y R+K+  +MSG   GR Q NSRF
Sbjct: 187 FLLISGSIIYLRKKKVASMSGYVAGRGQNNSRF 219


>Glyma01g04560.1 
          Length = 219

 Score =  194 bits (494), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 110/213 (51%), Positives = 135/213 (63%), Gaps = 32/213 (15%)

Query: 30  SDQTTNG-GSGSRVLLVFKEKPEGSNLTFDCSPSGACVPCQYSEKTDEKYRCSETGYRIP 88
           S++T +G G   RVLL FKEKP GSN+TF+C+PSG CVPC YSEK DEKYRCSETGYRIP
Sbjct: 34  SEETQHGNGVRRRVLLSFKEKPSGSNVTFECAPSGPCVPCLYSEKGDEKYRCSETGYRIP 93

Query: 89  LKCIETKDNIKNGNDKKSQKTRSVIEISNENANPHAMLHDAA----SNEQRSLLDDSSTL 144
            KC+E KD+ K+    KSQK R  +EIS+  A  H + H A     S   R L+DDS + 
Sbjct: 94  FKCVEIKDSTKDAKKTKSQKGRLSLEISDGIAESHIVSHVAGEINPSQSHRRLVDDSLSS 153

Query: 145 EDGSQAYITYRSCIPPVNEEKLSVLGFEAFCEIAVFKNCLTECGYXCLAVNHDAQGIILC 204
           ++ SQAYITYRSCI PVNEEKLS+L FE                           G+++ 
Sbjct: 154 DNSSQAYITYRSCITPVNEEKLSLLNFE---------------------------GLVIF 186

Query: 205 LFLISGSVVYFRRKQTVTMSGVGGGRIQMNSRF 237
           L LISGS++Y R+K+  +MSG   GR Q NSRF
Sbjct: 187 LLLISGSIIYLRKKKAASMSGYVAGRGQNNSRF 219