Jatropha Genome Database

JcCA0317171.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0317171.10 + phase: 0 /pseudo/partial
         (575 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma12g02470.2                                                       163   5e-40
Glyma12g02470.1                                                       163   6e-40
Glyma11g10150.2                                                       102   2e-21
Glyma11g10150.1                                                       102   2e-21
Glyma17g05400.1                                                        62   2e-09
Glyma12g30530.1                                                        61   4e-09
Glyma11g19530.1                                                        60   7e-09
Glyma12g08950.1                                                        59   1e-08

>Glyma12g02470.2 
          Length = 1633

 Score =  163 bits (412), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 100/241 (41%), Positives = 126/241 (52%), Gaps = 24/241 (9%)

Query: 167  HVKSDSKTGKSNAKRGKNIIRNAKVQHQKSKRTPSGCKSVLIKNNKKVXX--XXXXXXXQ 224
            H   D    K+N  + K   +  K+Q +K K  PS CK V +K NKK            +
Sbjct: 1364 HRCQDGLHAKTNTNKRKVDSKLQKIQAKKRKTVPSVCKPVNLKGNKKALSNNKIRQARSR 1423

Query: 225  KNKKVTIVVPLRRSPRKAKYNSLQNXXXXXXXXXX------------------XXXXXXX 266
             +K +   +PLRRS RKAK   +Q+                                   
Sbjct: 1424 NSKNIPSSIPLRRSTRKAKSLYMQSQLNGGHKKGKKNVGRKKGKQGKTKKVIPQKSKETT 1483

Query: 267  XXXXXXXXTSFRKKRTENYHSYWLNGLFLSRKPGDERVMHFRSKKFLAPSE--SVSLDQH 324
                    T+ RKKRT+  +SYWLNGL LSRKP DERVM F+ KK +A S+  S SLD  
Sbjct: 1484 GQYKKSEVTTARKKRTKICNSYWLNGLQLSRKPNDERVMLFKEKKRVASSKDFSGSLDHP 1543

Query: 325  KCPLCHEAGYTSTLNYISCEMCGEWFHGDAFGLNVEKSNRLIGFRCHVCRKSTPPVCPFL 384
            KC LC   G   TLNYI+CE+CG+WFHGDAFGLNVE + +LIGF+CHVC   T P+CP L
Sbjct: 1544 KCCLC--CGNECTLNYIACEICGDWFHGDAFGLNVENARQLIGFKCHVCLDRTAPICPHL 1601

Query: 385  R 385
            +
Sbjct: 1602 K 1602


>Glyma12g02470.1 
          Length = 1649

 Score =  163 bits (412), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 100/241 (41%), Positives = 126/241 (52%), Gaps = 24/241 (9%)

Query: 167  HVKSDSKTGKSNAKRGKNIIRNAKVQHQKSKRTPSGCKSVLIKNNKKVXX--XXXXXXXQ 224
            H   D    K+N  + K   +  K+Q +K K  PS CK V +K NKK            +
Sbjct: 1364 HRCQDGLHAKTNTNKRKVDSKLQKIQAKKRKTVPSVCKPVNLKGNKKALSNNKIRQARSR 1423

Query: 225  KNKKVTIVVPLRRSPRKAKYNSLQNXXXXXXXXXX------------------XXXXXXX 266
             +K +   +PLRRS RKAK   +Q+                                   
Sbjct: 1424 NSKNIPSSIPLRRSTRKAKSLYMQSQLNGGHKKGKKNVGRKKGKQGKTKKVIPQKSKETT 1483

Query: 267  XXXXXXXXTSFRKKRTENYHSYWLNGLFLSRKPGDERVMHFRSKKFLAPSE--SVSLDQH 324
                    T+ RKKRT+  +SYWLNGL LSRKP DERVM F+ KK +A S+  S SLD  
Sbjct: 1484 GQYKKSEVTTARKKRTKICNSYWLNGLQLSRKPNDERVMLFKEKKRVASSKDFSGSLDHP 1543

Query: 325  KCPLCHEAGYTSTLNYISCEMCGEWFHGDAFGLNVEKSNRLIGFRCHVCRKSTPPVCPFL 384
            KC LC   G   TLNYI+CE+CG+WFHGDAFGLNVE + +LIGF+CHVC   T P+CP L
Sbjct: 1544 KCCLC--CGNECTLNYIACEICGDWFHGDAFGLNVENARQLIGFKCHVCLDRTAPICPHL 1601

Query: 385  R 385
            +
Sbjct: 1602 K 1602


>Glyma11g10150.2 
          Length = 1605

 Score =  102 bits (253), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/215 (36%), Positives = 99/215 (46%), Gaps = 22/215 (10%)

Query: 167  HVKSDSKTGKSNAKRGKNIIRNAKVQHQKSKRTPSGCKSVLIKNNKKVXXXXX--XXXXQ 224
            H   D    K+N  + K   +  K+Q +K K  PS CKS+ +K NKK            +
Sbjct: 1388 HRCQDGLQAKTNTNKRKVDSKLQKIQAKKRKIVPSVCKSLNLKGNKKASSKNKIRQVRSR 1447

Query: 225  KNKKVTIVVPLRRSPRKAK-------YNSLQNXXXXXXXXXXXXXXXXXXXXXXXXXTSF 277
             +K +   +PLRRS RKAK        N                             T+ 
Sbjct: 1448 NSKNIPSSIPLRRSTRKAKSLYMHSQLNGGHKKGKSTKKNVGRKKGKQSQTKKKLPVTTA 1507

Query: 278  RKKRTENYHSYWLNGLFLSRKPGDERVMHFRSKKFLAPSE--SVSLDQHKCPLCHEAGYT 335
             KKRT   +SYWLNGL LSRK  DERVM F+ KK +  SE  S S+D  KC LC   G  
Sbjct: 1508 HKKRTRTCNSYWLNGLQLSRKSNDERVMLFKEKKCVVSSEDFSGSVDYPKCCLC--CGNE 1565

Query: 336  STLNYISCEMCGEWFHGDAFGLNVEKSNRLIGFRC 370
             TLNYI+CE+CG    GD F      S  L+ +RC
Sbjct: 1566 CTLNYIACEICG----GDYF-----NSYLLVSWRC 1591


>Glyma11g10150.1 
          Length = 1605

 Score =  102 bits (253), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/215 (36%), Positives = 99/215 (46%), Gaps = 22/215 (10%)

Query: 167  HVKSDSKTGKSNAKRGKNIIRNAKVQHQKSKRTPSGCKSVLIKNNKKVXXXXX--XXXXQ 224
            H   D    K+N  + K   +  K+Q +K K  PS CKS+ +K NKK            +
Sbjct: 1388 HRCQDGLQAKTNTNKRKVDSKLQKIQAKKRKIVPSVCKSLNLKGNKKASSKNKIRQVRSR 1447

Query: 225  KNKKVTIVVPLRRSPRKAK-------YNSLQNXXXXXXXXXXXXXXXXXXXXXXXXXTSF 277
             +K +   +PLRRS RKAK        N                             T+ 
Sbjct: 1448 NSKNIPSSIPLRRSTRKAKSLYMHSQLNGGHKKGKSTKKNVGRKKGKQSQTKKKLPVTTA 1507

Query: 278  RKKRTENYHSYWLNGLFLSRKPGDERVMHFRSKKFLAPSE--SVSLDQHKCPLCHEAGYT 335
             KKRT   +SYWLNGL LSRK  DERVM F+ KK +  SE  S S+D  KC LC   G  
Sbjct: 1508 HKKRTRTCNSYWLNGLQLSRKSNDERVMLFKEKKCVVSSEDFSGSVDYPKCCLC--CGNE 1565

Query: 336  STLNYISCEMCGEWFHGDAFGLNVEKSNRLIGFRC 370
             TLNYI+CE+CG    GD F      S  L+ +RC
Sbjct: 1566 CTLNYIACEICG----GDYF-----NSYLLVSWRC 1591


>Glyma17g05400.1 
          Length = 1410

 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 47/94 (50%), Gaps = 4/94 (4%)

Query: 292  GLFLSRKPGDERVMHFRSKKFLAPSESVSLDQHK--CPLCHEAGYTSTLNYISCEMCGEW 349
            G+   +K  ++    FR K  L   E   L Q    C LCH+  Y S L YI CE C  W
Sbjct: 1056 GIIWKKKNNEDTGFDFRLKNILL-KEGSGLPQLDPVCRLCHKP-YRSDLMYICCETCKHW 1113

Query: 350  FHGDAFGLNVEKSNRLIGFRCHVCRKSTPPVCPF 383
            +H +A  L   K   ++GF+C  CR+   PVCP+
Sbjct: 1114 YHAEAVELEESKLFDVLGFKCCKCRRIKSPVCPY 1147


>Glyma12g30530.1 
          Length = 1503

 Score = 60.8 bits (146), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 47/94 (50%), Gaps = 4/94 (4%)

Query: 292  GLFLSRKPGDERVMHFRSKKFLAPSESVSLDQHK--CPLCHEAGYTSTLNYISCEMCGEW 349
            G+   +K  ++    FR K  L    S  L Q    C LCH+  Y S L YI CE C  W
Sbjct: 1148 GVIWKKKNNEDTGFDFRLKNILLKGGS-GLPQLDPVCRLCHKP-YRSDLMYICCETCKHW 1205

Query: 350  FHGDAFGLNVEKSNRLIGFRCHVCRKSTPPVCPF 383
            +H +A  L   K   ++GF+C  CR+   PVCP+
Sbjct: 1206 YHAEAVELEESKLFDVLGFKCCKCRRIKSPVCPY 1239


>Glyma11g19530.1 
          Length = 1360

 Score = 60.1 bits (144), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 327  PLCH--EAGYTSTLNYISCEMCGEWFHGDAFGLNVEKSNRLIGFRCHVCRKSTPPVCPF 383
            P+CH     Y S L YI CE C  W+H +A  L   K + ++GF+C  CR+   PVCP+
Sbjct: 1072 PVCHLCRKPYMSDLTYICCETCQNWYHAEAVELEESKISSVLGFKCSKCRRIKSPVCPY 1130


>Glyma12g08950.1 
          Length = 1429

 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 327  PLCH--EAGYTSTLNYISCEMCGEWFHGDAFGLNVEKSNRLIGFRCHVCRKSTPPVCPF 383
            P+CH     Y S L YI CE C  W+H +A  L   K + ++GF+C  CR+   PVCP+
Sbjct: 1071 PVCHLCRKPYMSDLTYICCETCRNWYHAEAVELEESKISSVLGFKCCKCRRIKSPVCPY 1129