Jatropha Genome Database

JcCA0317001.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0317001.20 - phase: 0 
         (215 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma16g23160.1                                                       275   2e-74
Glyma16g23160.2                                                       162   3e-40

>Glyma16g23160.1 
          Length = 213

 Score =  275 bits (704), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 140/215 (65%), Positives = 157/215 (73%), Gaps = 2/215 (0%)

Query: 1   MAFAQYLLAVPVETSTHPKITILNXXXXXXXXXXXXXXXXXXXXXXXXXKAQKLSFFPKL 60
           MAFA YLLAVPVE S  P                                  K S F + 
Sbjct: 1   MAFAHYLLAVPVEPS--PNFPTNPPKPNPSLSSSSSSSISSHCFNLSSSLRPKHSLFSRF 58

Query: 61  QRIGHKAKAMPQESEVSLAADAFTHFKHLLLPITDRNPYLSEGTRQXXXXXXXXXKKYGA 120
           +RI HKAKA PQE EV++A+DAFT FKHLLLPITDRNPYLSEGTRQ         KKYGA
Sbjct: 59  RRICHKAKAKPQEPEVTVASDAFTQFKHLLLPITDRNPYLSEGTRQAIATTSALAKKYGA 118

Query: 121 DITVVVIDEKERESLPEHETQMSSIRWHLSEGGFQEFKLLERLGEGNKPTAIIGDVADEL 180
           DITVVVID +++ESLPEHETQ+SSIRWHLSEGG +++ LLERLG+GNKPTAIIGDVAD+L
Sbjct: 119 DITVVVIDAQQKESLPEHETQLSSIRWHLSEGGLKDYNLLERLGDGNKPTAIIGDVADDL 178

Query: 181 NLDLVVISMEAIHSKHVDANLLAEFIPCPVLLLPL 215
           NLDLVVISMEAIH+KH+DANLLAEFIPCPV+LLPL
Sbjct: 179 NLDLVVISMEAIHTKHIDANLLAEFIPCPVMLLPL 213


>Glyma16g23160.2 
          Length = 151

 Score =  162 bits (410), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 87/152 (57%), Positives = 96/152 (63%), Gaps = 2/152 (1%)

Query: 1   MAFAQYLLAVPVETSTHPKITILNXXXXXXXXXXXXXXXXXXXXXXXXXKAQKLSFFPKL 60
           MAFA YLLAVPVE S  P                                  K S F + 
Sbjct: 1   MAFAHYLLAVPVEPS--PNFPTNPPKPNPSLSSSSSSSISSHCFNLSSSLRPKHSLFSRF 58

Query: 61  QRIGHKAKAMPQESEVSLAADAFTHFKHLLLPITDRNPYLSEGTRQXXXXXXXXXKKYGA 120
           +RI HKAKA PQE EV++A+DAFT FKHLLLPITDRNPYLSEGTRQ         KKYGA
Sbjct: 59  RRICHKAKAKPQEPEVTVASDAFTQFKHLLLPITDRNPYLSEGTRQAIATTSALAKKYGA 118

Query: 121 DITVVVIDEKERESLPEHETQMSSIRWHLSEG 152
           DITVVVID +++ESLPEHETQ+SSIRWHLSEG
Sbjct: 119 DITVVVIDAQQKESLPEHETQLSSIRWHLSEG 150