Jatropha Genome Database

JcCA0316871.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0316871.20 - phase: 0 
         (185 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma01g00710.1                                                       140   6e-34
Glyma07g15360.1                                                       136   1e-32
Glyma05g36340.1                                                        72   3e-13
Glyma08g03260.1                                                        72   4e-13
Glyma01g00540.1                                                        67   1e-11
Glyma07g15580.1                                                        67   1e-11
Glyma09g17800.1                                                        57   1e-08
Glyma07g28900.1                                                        54   1e-07

>Glyma01g00710.1 
          Length = 138

 Score =  140 bits (354), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 63/111 (56%), Positives = 79/111 (71%)

Query: 69  NNDSQVKCSKTCVAENCNSVGIRYGKYCGVGWTGCPGEKPCDDLDACCKIHDECVEKKGL 128
           N   Q  CS TC+AE C++VGI+YGKYCGVG+ GC GEKPCDDLDACC  HD+CV+K G+
Sbjct: 23  NCSDQANCSTTCIAEQCDTVGIKYGKYCGVGYWGCAGEKPCDDLDACCMAHDDCVDKFGM 82

Query: 129 MSIKCHEXXXXXXXXXXXXXXIGFSRDCTYETAVPTMLQGMDMAILLSQLG 179
             +KCH+              +GFS++C Y  A PTM++GMD+AILLSQLG
Sbjct: 83  THVKCHKKLKNCLTRELKSGKVGFSKECPYSRAAPTMIRGMDLAILLSQLG 133


>Glyma07g15360.1 
          Length = 138

 Score =  136 bits (343), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 61/111 (54%), Positives = 77/111 (69%)

Query: 69  NNDSQVKCSKTCVAENCNSVGIRYGKYCGVGWTGCPGEKPCDDLDACCKIHDECVEKKGL 128
           N   Q  CS TC+ E C+++GI+YGKYCGVG+ GC GEKPCDDLDACC  HD CV+K G+
Sbjct: 22  NCSDQGNCSTTCIVEQCDTIGIKYGKYCGVGYWGCAGEKPCDDLDACCMAHDNCVDKFGM 81

Query: 129 MSIKCHEXXXXXXXXXXXXXXIGFSRDCTYETAVPTMLQGMDMAILLSQLG 179
             +KCH+              +GFS++C Y  A PTM++GMD+AILLSQLG
Sbjct: 82  THVKCHKRLKNCLTRELKSGKVGFSKECPYSRAAPTMIRGMDLAILLSQLG 132


>Glyma05g36340.1 
          Length = 107

 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 43/66 (65%)

Query: 61  LSVLANSPNNDSQVKCSKTCVAENCNSVGIRYGKYCGVGWTGCPGEKPCDDLDACCKIHD 120
           L  L++ P         +TC +  C+   +RYGKYCG+ ++GCPGEKPCD LDACC  HD
Sbjct: 20  LIFLSSLPYLTKSAAEHRTCESSFCSVPLLRYGKYCGLLYSGCPGEKPCDGLDACCIYHD 79

Query: 121 ECVEKK 126
           +CV+ K
Sbjct: 80  KCVQAK 85


>Glyma08g03260.1 
          Length = 158

 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 31/53 (58%), Positives = 41/53 (77%), Gaps = 1/53 (1%)

Query: 75  KCSKTCVAENCNSVGI-RYGKYCGVGWTGCPGEKPCDDLDACCKIHDECVEKK 126
           +CS+TC +  C+   + RYGKYCG+ ++GCPGEKPCD LDACC  HD+CV+ K
Sbjct: 47  ECSRTCESSFCSVPPLLRYGKYCGLLYSGCPGEKPCDGLDACCMYHDKCVQAK 99


>Glyma01g00540.1 
          Length = 157

 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 39/53 (73%), Gaps = 1/53 (1%)

Query: 75  KCSKTCVAENCNSVGI-RYGKYCGVGWTGCPGEKPCDDLDACCKIHDECVEKK 126
           +CS+ C +  C+   + RYGKYCG+ ++GCPGE+PCD LDACC  HD+CV  K
Sbjct: 46  ECSRQCESSFCSVPPLLRYGKYCGLLYSGCPGERPCDGLDACCMKHDQCVSAK 98


>Glyma07g15580.1 
          Length = 156

 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 39/53 (73%), Gaps = 1/53 (1%)

Query: 75  KCSKTCVAENCNSVGI-RYGKYCGVGWTGCPGEKPCDDLDACCKIHDECVEKK 126
           +CS+ C +  C+   + RYGKYCG+ ++GCPGE+PCD LDACC  HD+CV  K
Sbjct: 45  ECSRQCESSFCSVPPLLRYGKYCGLLYSGCPGERPCDGLDACCMKHDQCVSAK 97


>Glyma09g17800.1 
          Length = 69

 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 24/43 (55%), Positives = 30/43 (69%)

Query: 81  VAENCNSVGIRYGKYCGVGWTGCPGEKPCDDLDACCKIHDECV 123
           V   C    +RYGKYCG  ++GCP E+PCD LDACC  HD+C+
Sbjct: 10  VLFFCLPPLLRYGKYCGFLYSGCPWERPCDGLDACCMKHDQCL 52


>Glyma07g28900.1 
          Length = 49

 Score = 53.5 bits (127), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/33 (66%), Positives = 27/33 (81%)

Query: 94  KYCGVGWTGCPGEKPCDDLDACCKIHDECVEKK 126
           +Y G+ + GCPGEKPCDDLDACC  HD+CV+ K
Sbjct: 14  QYYGLLYNGCPGEKPCDDLDACCIYHDKCVQVK 46