Jatropha Genome Database

JcCA0316521.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0316521.10 + phase: 0 /pseudo/partial
         (207 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma05g35880.1                                                       117   1e-26
Glyma08g03740.1                                                       114   7e-26
Glyma05g30310.1                                                        79   3e-15

>Glyma05g35880.1 
          Length = 310

 Score =  117 bits (292), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/190 (42%), Positives = 101/190 (53%), Gaps = 15/190 (7%)

Query: 26  VSLSNTRIGSIDIRVMGRSVYAHL--AGYTHRLHSDPLXRPTSRSHWG-----QPCSISY 78
           +S SNTR+G I   VMG+S+ AHL  AGYT  + +    +       G      P +++ 
Sbjct: 8   ISPSNTRVGWIGTGVMGQSMCAHLIRAGYTLTVFNRTPSKAQPLLDLGAYFAPSPHAVAA 67

Query: 79  CR--CLSIXCHFFHRRLSFPHPSSPTGFXXXXXXXXXXXXXXCCMTTFDPFLASEISDVA 136
                 SI  +    R    HPSS                    MTT +P LA EI+D A
Sbjct: 68  RSDVVFSIVGYPSDVRSVLLHPSS------GALSALRPGGVLVDMTTSEPSLAVEIADAA 121

Query: 137 FAKNYHSIDAPVSRGDRGDKNKTHAIFAGGDKVVIDRLNPLFVLMGKVNYMGAPGKGQLA 196
            AK  HSIDAPVS GDRG KN T AIFAGG++  + R+  LF  +GKVNYMG  GKGQ A
Sbjct: 122 TAKGCHSIDAPVSGGDRGAKNGTLAIFAGGEESTVKRMEALFSHLGKVNYMGGSGKGQFA 181

Query: 197 KLTNQIAISS 206
           KL NQ+ I+S
Sbjct: 182 KLANQVTIAS 191


>Glyma08g03740.1 
          Length = 336

 Score =  114 bits (285), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 86/209 (41%), Positives = 111/209 (53%), Gaps = 16/209 (7%)

Query: 7   RRVLVLYLQHCSVATNTEFVSLSNTRIGSIDIRVMGRSVYAHL--AGYT----HRLHSDP 60
           RR+    ++H  +A     +S SNTR+G I   VMG+S+ AHL  AGYT    +R  S  
Sbjct: 17  RRIHTSIVRHF-MAAAEPIISSSNTRVGWIGTGVMGQSMCAHLIRAGYTLTVFNRTPSKA 75

Query: 61  LXRPTSRSHWG-QPCSISYCR--CLSIXCHFFHRRLSFPHPSSPTGFXXXXXXXXXXXXX 117
                  +H+   P +++       +I  +    R    HPSS                 
Sbjct: 76  QPLLDLGAHFAPSPHAVAANSDVVFTIVGYPSDVRSVLLHPSS------GALSALRPGGV 129

Query: 118 XCCMTTFDPFLASEISDVAFAKNYHSIDAPVSRGDRGDKNKTHAIFAGGDKVVIDRLNPL 177
              MTT +P LA+EI+  A AK  HSIDAPVS GDRG KN T AIFAGG++  + RL PL
Sbjct: 130 LVDMTTSEPSLATEIAAAAAAKGCHSIDAPVSGGDRGAKNGTLAIFAGGEEATVKRLEPL 189

Query: 178 FVLMGKVNYMGAPGKGQLAKLTNQIAISS 206
           F  +GKV YMG  GKGQ AKL NQ+ I+S
Sbjct: 190 FSHLGKVKYMGGSGKGQFAKLANQVTIAS 218


>Glyma05g30310.1 
          Length = 309

 Score = 79.3 bits (194), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 87/185 (47%), Gaps = 3/185 (1%)

Query: 26  VSLSNTRIGSIDIRVMGRSVYAHL--AGYTHRLHSDPLXRPTSRSHWGQPCSISYCRC-L 82
           +S S TRIG I I VMG ++ + L  AGYT   ++     P + S   Q  +++     L
Sbjct: 9   ISTSETRIGWIGIGVMGFAMASRLLSAGYTLSFYARNPSNPNALSLQSQGATLAQSPAQL 68

Query: 83  SIXCHFFHRRLSFPHPSSPTGFXXXXXXXXXXXXXXCCMTTFDPFLASEISDVAFAKNYH 142
           +         +  P                         T+  P LA +I   A + +  
Sbjct: 69  AQLSDVLFTMVGHPSDVRSLLLDSPVLSSLRPNSVVVDTTSSHPDLARQIFSAARSLDAW 128

Query: 143 SIDAPVSRGDRGDKNKTHAIFAGGDKVVIDRLNPLFVLMGKVNYMGAPGKGQLAKLTNQI 202
           S+DAPVS GD G ++   AI A G+K V++ L+PLF ++G+  YMG  G GQ  K+ NQI
Sbjct: 129 SVDAPVSGGDIGARDGKLAILAAGEKAVVEWLSPLFSILGRATYMGPAGCGQSCKIANQI 188

Query: 203 AISSH 207
            I ++
Sbjct: 189 TIGAN 193