Jatropha Genome Database

JcCA0316511.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0316511.20 - phase: 2 /partial
         (66 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g41430.1                                                        52   1e-07

>Glyma08g41430.1 
          Length = 722

 Score = 52.4 bits (124), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/43 (53%), Positives = 34/43 (79%), Gaps = 4/43 (9%)

Query: 24  MKLFKEMREIGIEMDGFTLSGVINGVITACCNDLNLIRQFHCW 66
           ++LF+E+RE+ + +DGFTLS    GVITAC +D+ L+RQ HC+
Sbjct: 126 LRLFEEVRELRLGLDGFTLS----GVITACGDDVGLVRQLHCF 164