Jatropha Genome Database

JcCA0316341.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0316341.10 + phase: 0 /partial
         (138 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma07g06810.1                                                       148   2e-36
Glyma16g34010.1                                                       126   8e-30
Glyma09g29520.1                                                       122   1e-28
Glyma02g00320.1                                                        49   2e-06
Glyma05g32180.2                                                        49   2e-06

>Glyma07g06810.1 
          Length = 367

 Score =  148 bits (373), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 85/111 (76%), Positives = 98/111 (88%), Gaps = 4/111 (3%)

Query: 31  VDSLSMGMNSEVDN----LGSRGKRIKEILERELKPIELEVEDISYQHAGHAGVRGSDGE 86
           V++ S G +SE+ +    L  RGKRI+E LE+EL+P+ELEVED+SYQHAGHAGVRGSDGE
Sbjct: 257 VENSSGGESSEIVDENIELWGRGKRIREKLEKELEPVELEVEDVSYQHAGHAGVRGSDGE 316

Query: 87  THFNLRVVSKEFEGKSLVKRHRLIYGLLQEELQSGLHALSIVAKTPAEVDA 137
           THFN+RVVSKEFEGKSLVKRHRLIYGLLQEEL +GLHALSIVAKTPAEV+ 
Sbjct: 317 THFNVRVVSKEFEGKSLVKRHRLIYGLLQEELDAGLHALSIVAKTPAEVEG 367


>Glyma16g34010.1 
          Length = 104

 Score =  126 bits (316), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 62/91 (68%), Positives = 73/91 (80%), Gaps = 1/91 (1%)

Query: 47  SRGKRIKEILERELKPIELEVEDISYQHAGHAGVRGS-DGETHFNLRVVSKEFEGKSLVK 105
           SR  RI+  L+  L+   LEV+D+SYQHAGHA V+GS D ETHFNL +VS +FEG+SLVK
Sbjct: 11  SRASRIRSKLQTALEATVLEVDDVSYQHAGHAAVKGSSDKETHFNLNIVSPKFEGQSLVK 70

Query: 106 RHRLIYGLLQEELQSGLHALSIVAKTPAEVD 136
           RHRLIY LL +ELQSGLHALSIVAKTP E +
Sbjct: 71  RHRLIYDLLADELQSGLHALSIVAKTPHETN 101


>Glyma09g29520.1 
          Length = 104

 Score =  122 bits (306), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 61/93 (65%), Positives = 74/93 (79%), Gaps = 1/93 (1%)

Query: 45  LGSRGKRIKEILERELKPIELEVEDISYQHAGHAGVRGS-DGETHFNLRVVSKEFEGKSL 103
           L SR  RI+  L+  L+   LEV+D+SYQHAGHA V+GS D ETHFN+++VS +FEG+SL
Sbjct: 9   LLSRASRIRSKLQTALEATVLEVDDVSYQHAGHAAVKGSSDKETHFNVKIVSPKFEGQSL 68

Query: 104 VKRHRLIYGLLQEELQSGLHALSIVAKTPAEVD 136
           VKRHRL+Y LL EELQSGLHALSIVAKT  E +
Sbjct: 69  VKRHRLVYDLLAEELQSGLHALSIVAKTLHETN 101


>Glyma02g00320.1 
          Length = 157

 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 36/56 (64%), Gaps = 2/56 (3%)

Query: 84  DGETHFNLRVVSKEFEGKSLVKRHRLIYGLLQEELQSGLHAL-SIVAKTPAEVDAR 138
           DG  H ++ VV+  FEG+S V R R++Y  + EELQ+ +HA+  +   TPAE  A+
Sbjct: 103 DGR-HVSIDVVATAFEGQSAVNRQRMVYKAIWEELQTVVHAVDQMTTSTPAEAAAK 157


>Glyma05g32180.2 
          Length = 93

 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 54/89 (60%), Gaps = 13/89 (14%)

Query: 45  LGSRGKRIKEILERELKPIELEVEDISYQHAGHAGVRGSDGETHFNLRVVSKEFEGKSLV 104
           +G   ++++  L+ +L P  LEV DIS          G  G + F + +VS++FEGK L+
Sbjct: 1   MGVTKEQVELSLKAKLNPSHLEVVDIS----------GGCGAS-FVVEIVSEQFEGKRLL 49

Query: 105 KRHRLIYGLLQEELQSGLHALSI-VAKTP 132
           +RHR++   L+EE++  +HALSI  A TP
Sbjct: 50  ERHRMVNAALEEEMKQ-IHALSIKKAVTP 77