Jatropha Genome Database

JcCA0316311.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0316311.30 - phase: 0 /pseudo/partial
         (730 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g16090.1                                                        59   2e-08

>Glyma08g16090.1 
          Length = 629

 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 93/375 (24%), Positives = 148/375 (39%), Gaps = 56/375 (14%)

Query: 267 EIEIMRDPVQGFSPEKLPSGFPDHQ-NDAFQPTTSFDQGLNEKEIPSPFKEDALPSGGQP 325
           ++E+ RD     + E  P  F + + ND  +P    DQ  NEK+       D       P
Sbjct: 252 QVEVGRDANNDDNVEN-PQVFTNREDNDVAEPNGGLDQTTNEKDHVPGMMRDLNFRMSVP 310

Query: 326 SPFQRHSEAPEKFITDISFGNRSPELAIRSTXXXXXXXXXXXXXXHFFDESTVLTN---- 381
           SP    +    +   ++      P+  +R +               FFDE  VLTN    
Sbjct: 311 SPMNPLTPPTSQGEINV------PDFVVRESPPIQQPQRRGRKRKQFFDEPIVLTNGFMR 364

Query: 382 ----------KRRKEIPSTALGIWKLNKNLRREQVLYEPSLTGYSANICN-----LFKRD 426
                     ++R+++PS++LG WKLN N+RR++ +++  L  Y   + N     +F+ D
Sbjct: 365 SALNNTRDILRKRRDVPSSSLGTWKLN-NIRRKEHIFDQPLFLYHVTLFNISHLVIFEED 423

Query: 427 YI-ITKSHLTLE-REATPEPRVVTSPAPSTEAIAEARDANSPAPATEVVIEDRDVASP-A 483
           +  +     TL      PE  +  +  P  E IA    A +  P   +   D     P A
Sbjct: 424 HADVRMGEETLSPTNEPPEESLAATNEPPEEPIA----ATNQPPEEPIAATDHPHEEPIA 479

Query: 484 XXXXXXXXXXVAQSPASEAEPDLEIERLRHHEGQDGNRLLPDSPARFIPSPGR-FVSSPF 542
                      A SP +    D+++E          NR +  +P     +P     +SP 
Sbjct: 480 TTDQTSEEAITATSPVT----DMQVEH---------NRNVAVTPPATAQAPHEDDYTSPN 526

Query: 543 RRDDFTPNTQKNLGSGSVPWAQTSIETEVMPTPGVSASPGTCTTEP-ETPRTFLEDQFDL 601
           RRD F   +  N+   S+    T+I +E M T   + SPG    E  +TP +   D  DL
Sbjct: 527 RRDCFNMPSSHNISIASL---NTNIASERMHTLDYAVSPGVHGLEAMQTPDS---DTHDL 580

Query: 602 GHTGLSDIPESIAET 616
             +  +D   SI  T
Sbjct: 581 MSSDKTDYNVSILIT 595