Jatropha Genome Database

JcCA0316311.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0316311.10 - phase: 0 /pseudo
         (254 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma16g23150.1                                                        75   5e-14

>Glyma16g23150.1 
          Length = 706

 Score = 75.5 bits (184), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 46/100 (46%), Positives = 60/100 (60%), Gaps = 6/100 (6%)

Query: 1   MGSKNADYHNKKRKNKPNRDLDAEENHHEXXXXXXXXXXRKVIADPRFVSVHYDPRFQKV 60
           MGSKNA+  N K K K  +D +   NH              +I+DPR+   H DPRF++ 
Sbjct: 1   MGSKNANGKNHKDKRKKFKD-NLNSNHSSTGDAKVI-----IISDPRYSKAHTDPRFREA 54

Query: 61  SMLKSKVAIDSRFSRMFTDKNFQSSAAPLDKRGKVKKNKT 100
              ++KVAIDSRF+RMFT K+F  S+A +DKRGK K N T
Sbjct: 55  PKRETKVAIDSRFNRMFTHKSFLPSSALIDKRGKPKNNPT 94