Jatropha Genome Database

JcCA0316161.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0316161.20 - phase: 0 
         (204 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g02060.1                                                       158   3e-39
Glyma04g01960.1                                                       153   1e-37

>Glyma06g02060.1 
          Length = 204

 Score =  158 bits (400), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 98/204 (48%), Positives = 121/204 (59%), Gaps = 15/204 (7%)

Query: 1   MKSDRRPPLAKSPIRLRPRRVLQXXXX-XVQTPPGSLTKSQKPNLTREMEESDLRSENHT 59
           MKS  +PPL +SPIRLRP   +       +QTPPGSLTKSQKP ++      ++R E  T
Sbjct: 7   MKSMYKPPLPRSPIRLRPSHAVHSSNSIALQTPPGSLTKSQKPVIS-----PNMRPEYRT 61

Query: 60  MSCELRALARMVQDELGNAXXXXXXXXXXXXXXXXPLFERGRFYEVYSARRNX--XXXXX 117
           +SCELRAL +MV+DE   A                 LFERGRFY+ YSARRN        
Sbjct: 62  ISCELRALTKMVRDEFSKANSEKAASANSSV-----LFERGRFYDEYSARRNERLMRKKG 116

Query: 118 XXXXXXXXXXPYH-LGVTVESSKKRDS-KKLESLRKSVSAAYSVERSANPRYSLRSLSKE 175
                     P H LGVT+ES KK  S +K+ +LRKS+SAAYS   S  PRY LRS++KE
Sbjct: 117 VTAVDEGKAKPVHSLGVTMESGKKSSSVRKMGTLRKSISAAYSSGVSETPRYMLRSMTKE 176

Query: 176 NKKPPLPFNVEKSVCPSERKVGTR 199
           NKKPPL    +KSV   ++K+GTR
Sbjct: 177 NKKPPLAAKFDKSVVAGDKKMGTR 200


>Glyma04g01960.1 
          Length = 202

 Score =  153 bits (386), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 95/203 (46%), Positives = 116/203 (57%), Gaps = 15/203 (7%)

Query: 1   MKSDRRPPLAKSPIRLRPRRVLQXXXX-XVQTPPGSLTKSQKPNLTREMEESDLRSENHT 59
           +KS  +PPL +SPIRLRP           +QTPPGSLTKSQKP L+      ++R E  T
Sbjct: 7   IKSVYKPPLPRSPIRLRPSHAAHSSNSIALQTPPGSLTKSQKPVLS-----PNIRPEYRT 61

Query: 60  MSCELRALARMVQDELGNAXXXXXXXXXXXXXXXXPLFERGRFYEVYSARRNX--XXXXX 117
           +SCEL AL +MV+DE                     LFERGRFY+ YSARRN        
Sbjct: 62  ISCELWALTKMVRDEFSKVNSEKAATNSSV------LFERGRFYDEYSARRNERLMRKKG 115

Query: 118 XXXXXXXXXXPY-HLGVTVESSKKRDSKKLESLRKSVSAAYSVERSANPRYSLRSLSKEN 176
                     P   LGVT+ES KK   +K+ +LRKS+SAAYS   S  PRY LRS++KEN
Sbjct: 116 VTAVDEGKAKPVRSLGVTMESGKKTSVRKMGTLRKSISAAYSSGVSGTPRYMLRSMTKEN 175

Query: 177 KKPPLPFNVEKSVCPSERKVGTR 199
           KKPPL    +KSV   E+K+GTR
Sbjct: 176 KKPPLAAKFDKSVVAGEKKMGTR 198