Jatropha Genome Database

JcCA0315891.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0315891.10 - phase: 0 /partial
         (145 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma03g42210.1                                                        97   7e-21
Glyma12g07600.1                                                        55   4e-08
Glyma19g44960.1                                                        49   2e-06

>Glyma03g42210.1 
          Length = 498

 Score = 96.7 bits (239), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 52/77 (67%), Positives = 64/77 (83%)

Query: 69  GSPARVQKLIASQSDALLAKEIFDYASRQPNFRHSYSSYLVLILKLGRSKYFSLIDEILI 128
           GSP RVQKLIASQSD LLAKEIFD ASRQP FRH+YSSYL+L+LKLGRSK+FSL+D++L 
Sbjct: 89  GSPTRVQKLIASQSDPLLAKEIFDLASRQPKFRHTYSSYLILLLKLGRSKHFSLLDDLLR 148

Query: 129 DLKSKHYVVKSNVFSYI 145
            LK   + +   +F+Y+
Sbjct: 149 RLKFDSHPITPTLFTYL 165


>Glyma12g07600.1 
          Length = 500

 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 40/61 (65%)

Query: 70  SPARVQKLIASQSDALLAKEIFDYASRQPNFRHSYSSYLVLILKLGRSKYFSLIDEILID 129
           +P  +  +IA Q+D L+  E+F +AS+QP FRH  S++ + I KLG +K +  +D+I+  
Sbjct: 176 TPEELCNVIARQNDPLVCLELFHWASQQPRFRHDVSTFHITIKKLGAAKMYQEMDDIVNQ 235

Query: 130 L 130
           L
Sbjct: 236 L 236


>Glyma19g44960.1 
          Length = 381

 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 47/80 (58%), Gaps = 3/80 (3%)

Query: 66  SLIGSPARVQKLIASQSDALLAKEIFDYASRQPNFRHSYSSYLVLILKLGRSKYFSLIDE 125
             + +P ++ KL+      L  K++ +     P    +YSSYL+L+LKLGRSK+F+ +D 
Sbjct: 24  CFLSTPKKLGKLVPH---VLSKKKLPNQTLFWPKKSWTYSSYLILLLKLGRSKHFTFLDG 80

Query: 126 ILIDLKSKHYVVKSNVFSYI 145
           +L  LKS  + +   +F+Y+
Sbjct: 81  LLRPLKSDSHPITPTLFTYL 100