Jatropha Genome Database

JcCA0315721.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0315721.20 + phase: 0 
         (143 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma03g30840.1                                                        96   2e-20
Glyma19g33670.1                                                        93   1e-19
Glyma10g03050.1                                                        68   3e-12

>Glyma03g30840.1 
          Length = 124

 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/126 (40%), Positives = 67/126 (53%), Gaps = 9/126 (7%)

Query: 23  MGKVVNGIPPQPSQRPLCVSQFALANYACSRMP-------PSPASDIFFXXXXXXXXXXX 75
           M   +  IP  P  RPLC SQFAL NYACSR+P        SP+ D              
Sbjct: 1   MESQIKPIPKTP--RPLCASQFALVNYACSRLPFSPGVPPDSPSPDEENNNHHNRSHRHG 58

Query: 76  XXXXXXXXXXXXSAVENCCRWLSDVDNECVCDLLIRLPIFLARPAHQFTIVIGDTCTITF 135
                          +NCCRW  +VD++CVC+LL+RLP FL RP+HQ+T+ +G +C IT+
Sbjct: 59  HRHGHRHRHHQTPDEDNCCRWAKEVDHQCVCELLLRLPPFLIRPSHQYTLKVGASCDITY 118

Query: 136 SCSGRV 141
           SC   +
Sbjct: 119 SCGAPI 124


>Glyma19g33670.1 
          Length = 135

 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 48/125 (38%), Positives = 64/125 (51%), Gaps = 14/125 (11%)

Query: 29  GIPPQPSQRPLCVSQFALANYACSRMPPSPA--------------SDIFFXXXXXXXXXX 74
           G+P   + RPLC SQFAL NYACSR+P S                 +             
Sbjct: 9   GMPMPKTPRPLCASQFALVNYACSRLPFSLGVPPDSPSTPPSPNDEEGHRNNHHNGSHRH 68

Query: 75  XXXXXXXXXXXXXSAVENCCRWLSDVDNECVCDLLIRLPIFLARPAHQFTIVIGDTCTIT 134
                        +  +NCCRW  +VDN+CVC+LL+RLP FL RP HQ+T+ +G++C IT
Sbjct: 69  GHRHGHKHRNHQTADEDNCCRWAKEVDNQCVCELLLRLPPFLIRPLHQYTLNVGESCDIT 128

Query: 135 FSCSG 139
           +SC  
Sbjct: 129 YSCGA 133


>Glyma10g03050.1 
          Length = 129

 Score = 67.8 bits (164), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 57/105 (54%), Gaps = 15/105 (14%)

Query: 35  SQRPLCVSQFALANYACSRMPPSPASDIFFXXXXXXXXXXXXXXXXXXXXXXXSAVENCC 94
           S  PLC+SQ AL +YAC+ +PP+                                 ENCC
Sbjct: 38  SLHPLCLSQLALVSYACAMLPPTTTLPPSPLTPPPSPSSPE---------------ENCC 82

Query: 95  RWLSDVDNECVCDLLIRLPIFLARPAHQFTIVIGDTCTITFSCSG 139
           RW  ++DN+CVC+ L+ LP FL RP HQ++I IG++C +T+SC G
Sbjct: 83  RWAREMDNQCVCEFLLLLPPFLTRPLHQYSISIGESCNVTYSCGG 127