Jatropha Genome Database

JcCA0315721.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0315721.10 + phase: 0 
         (200 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma19g33670.1                                                        77   2e-14
Glyma03g30840.1                                                        75   3e-14
Glyma10g03050.1                                                        64   1e-10

>Glyma19g33670.1 
          Length = 135

 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 32/57 (56%), Positives = 42/57 (73%)

Query: 140 RELTAQQNCCRWLNELDDECVCELLVRLPPFLSRPAHVYTLYLDESCNVTYACQGRI 196
            +   + NCCRW  E+D++CVCELL+RLPPFL RP H YTL + ESC++TY+C   I
Sbjct: 79  HQTADEDNCCRWAKEVDNQCVCELLLRLPPFLIRPLHQYTLNVGESCDITYSCGAPI 135


>Glyma03g30840.1 
          Length = 124

 Score = 75.5 bits (184), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 31/52 (59%), Positives = 40/52 (76%)

Query: 145 QQNCCRWLNELDDECVCELLVRLPPFLSRPAHVYTLYLDESCNVTYACQGRI 196
           + NCCRW  E+D +CVCELL+RLPPFL RP+H YTL +  SC++TY+C   I
Sbjct: 73  EDNCCRWAKEVDHQCVCELLLRLPPFLIRPSHQYTLKVGASCDITYSCGAPI 124


>Glyma10g03050.1 
          Length = 129

 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/52 (59%), Positives = 42/52 (80%)

Query: 145 QQNCCRWLNELDDECVCELLVRLPPFLSRPAHVYTLYLDESCNVTYACQGRI 196
           ++NCCRW  E+D++CVCE L+ LPPFL+RP H Y++ + ESCNVTY+C G I
Sbjct: 78  EENCCRWAREMDNQCVCEFLLLLPPFLTRPLHQYSISIGESCNVTYSCGGPI 129