Jatropha Genome Database

JcCA0315371.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0315371.20 - phase: 0 /partial
         (175 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma04g06260.1                                                       176   1e-44

>Glyma04g06260.1 
          Length = 710

 Score =  176 bits (445), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 90/167 (53%), Positives = 119/167 (71%), Gaps = 2/167 (1%)

Query: 1   VAAISEQASESTGEAAKSEENPSDTLEWKSFDIRAVVSATEDLLLFILSEKGSRVRVFLV 60
           VAAISEQASE TG+ +  + + S    WK FD+ AVV +TEDLLLFILS+KG RVR+FL+
Sbjct: 545 VAAISEQASEITGDPSSEKFSSSSV--WKLFDMHAVVDSTEDLLLFILSDKGLRVRLFLL 602

Query: 61  RDIIKVADVFLRDKIVGCILDQKREGNEASKSEGHSTFMRVVNGFQYLRQAVKLAPELWT 120
           RDI++ ADVFL+D+++ C L++  +G      E  +   R+  GF+YL + VKLAP  WT
Sbjct: 603 RDIVEAADVFLQDEVIDCALNENPQGQRTLLFEERAILSRIGKGFEYLCEVVKLAPGEWT 662

Query: 121 AMLIRMALKPEFHSFILDIMSALVVHFNHKVPETSWVFMSRLLHKLV 167
           AMLIRMA KPE H F LDI+SAL +H +HK+    W+++SRLLHK  
Sbjct: 663 AMLIRMAGKPEVHKFALDIISALALHSSHKLQVACWLYLSRLLHKFT 709