Jatropha Genome Database

JcCA0314681.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0314681.10 - phase: 0 
         (187 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma17g12470.1                                                       206   9e-54
Glyma13g23730.1                                                       205   3e-53

>Glyma17g12470.1 
          Length = 194

 Score =  206 bits (525), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 101/182 (55%), Positives = 123/182 (67%), Gaps = 6/182 (3%)

Query: 12  MRQRHSQGYASGGDDLEDDACXXXXXXXXXXXXXXXWVEIVENVLWIASAIFIVYFGDRH 71
           MRQRHSQGYAS GDDLEDDAC               W+E++EN LW+ASA FI+YFGD+H
Sbjct: 13  MRQRHSQGYASSGDDLEDDACSRHRPFLAPSPPPRTWIEMLENFLWLASAAFILYFGDQH 72

Query: 72  SNLIYLLWHDERIRRLPLYLGMVGAGVNLVIFLYTSMFTWGVRRFDE-----KWELSSIS 126
           SNLIYLL HD RIRRLPLYLGM+G G+N +IF+YT++  W  RRFDE     KWE++SIS
Sbjct: 73  SNLIYLLCHDNRIRRLPLYLGMIGIGLNTMIFIYTTILVWSARRFDEKWGLKKWEVTSIS 132

Query: 127 ALPLVTLLGLVSFCLLSFALWPVWSXXXXXXXXXXXMASMVICPHIMIVTFRQQ-NDTFR 185
            LP  T+ G++SFC+ SFALWP+WS           MA MV+ P ++  T R Q  D  R
Sbjct: 133 VLPFATVFGIISFCMFSFALWPIWSFLTLPLLFTLFMACMVVIPCLIFGTLRPQYYDELR 192

Query: 186 ID 187
            D
Sbjct: 193 TD 194


>Glyma13g23730.1 
          Length = 194

 Score =  205 bits (521), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 100/182 (54%), Positives = 122/182 (67%), Gaps = 6/182 (3%)

Query: 12  MRQRHSQGYASGGDDLEDDACXXXXXXXXXXXXXXXWVEIVENVLWIASAIFIVYFGDRH 71
           MRQRHSQGYAS GDDLEDDAC               W+E++EN LW+ASA FI+YFGD+H
Sbjct: 13  MRQRHSQGYASSGDDLEDDACSRHRPFLAPSPPPRTWIEMLENFLWLASAAFILYFGDQH 72

Query: 72  SNLIYLLWHDERIRRLPLYLGMVGAGVNLVIFLYTSMFTWGVRRFDE-----KWELSSIS 126
           SNLIYLL HD RI+R PLYLGM+G G+N++IF+YT+   W  RRFDE     KWE++SIS
Sbjct: 73  SNLIYLLCHDNRIKRPPLYLGMIGIGLNIMIFIYTTTLAWSARRFDEKWGLKKWEITSIS 132

Query: 127 ALPLVTLLGLVSFCLLSFALWPVWSXXXXXXXXXXXMASMVICPHIMIVTFRQQ-NDTFR 185
            LP  T+ G++SFCL SFALWP+WS           MA MV+ P ++  T R Q  D  R
Sbjct: 133 VLPFATVFGIISFCLFSFALWPIWSFLTLPLLFTLFMACMVVIPCLIFGTLRPQYYDELR 192

Query: 186 ID 187
            D
Sbjct: 193 TD 194