Jatropha Genome Database

JcCA0314181.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0314181.10 - phase: 0 /partial
         (554 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma20g18920.1                                                        80   6e-15
Glyma10g24580.1                                                        79   1e-14
Glyma20g18950.1                                                        53   9e-07

>Glyma20g18920.1 
          Length = 316

 Score = 80.1 bits (196), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 74/238 (31%), Positives = 107/238 (44%), Gaps = 52/238 (21%)

Query: 94  ENFYPSKNIPLFRRGAMVNDSKPETHNIGMRSRDKGKAEHIKMPSKQPL-------YLEK 146
           E  YPS+N P+FRR              G    +KGK+   K+PSK            E+
Sbjct: 32  EESYPSQNAPIFRRA----------QTDGAEKMEKGKSISSKVPSKSSHRGISILDLTEE 81

Query: 147 DALF---DMAFPRSASKSLQAQETRDVQISSNGESSLHF---SRMTSSNSLKGKEKIGVS 200
              F     AF    S+   A E +    ++NG S L     S  TS N+L GK K+ + 
Sbjct: 82  SGKFRHPKPAFSHRGSRD-NATEDKKTLKATNGNSLLPIISDSSNTSRNALTGKCKLDIK 140

Query: 201 SCNGSGSAINHGKEVDLNSVSQPKVEKQMSASHLAVTSPRVTGQKRLVRNGCISPHNIAS 260
           +  G+  +++HGK                             G KRLVRNGCISPHNIA+
Sbjct: 141 TLPGTNISVDHGKG---------------------------RGHKRLVRNGCISPHNIAT 173

Query: 261 RAQRLAERLRVGSADIGKYHSSNMVSDGPPT-VDIKEVVAEENNCHRAKGKGLVLHSS 317
             ++LAE+    + D  + H+ + VS    + V + ++VAEE    R KGK +++H S
Sbjct: 174 MEKQLAEQSNHQTKDAEQSHTGHSVSSNTVSPVSVDDLVAEERGDGRGKGKEILVHPS 231


>Glyma10g24580.1 
          Length = 638

 Score = 79.0 bits (193), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 91/331 (27%), Positives = 133/331 (40%), Gaps = 95/331 (28%)

Query: 4   MDIEQVVDVPDTPDRIIAHAQLGRESNSSAAAHSRTSDFRDKECLNKLGVSSRLVGESGH 63
           M I+ +V+VPDTPDR                                            H
Sbjct: 1   MKIDHIVEVPDTPDRTTVR----------------------------------------H 20

Query: 64  DRRLRL---NRQGVPVNM-DELKPRNKSIAFSPSENFYPSKNIPLFRRGAMVNDSKPETH 119
           D +  L   +++G   N  DE    +  I+ SPSE  Y S+N P+FRR            
Sbjct: 21  DYQKYLGNPDKRGRAFNAADENNNHSNYISLSPSEESYSSQNAPIFRRA----------Q 70

Query: 120 NIGMRSRDKGKAEHIKMPSKQP--------LYLEKDALF--DMAFPRSASKSLQAQETRD 169
             G    +KGK+   K+PSK          L  E + +     AF    S+   A E + 
Sbjct: 71  TDGAEKMEKGKSISSKVPSKSSHRGISILDLTEENEQIRHPKPAFSHRGSRD-NATEDKK 129

Query: 170 VQISSNGESSLHF---SRMTSSNSLKGKEKIGVSSCNGSGSAINHGKEVDLNSVSQPKVE 226
              ++NG SSL     S  TS N+  GK K+ + +  G   +++HGK             
Sbjct: 130 ALKATNGRSSLPVISDSSNTSRNAFIGKYKLDIKTLPGPNISVDHGKG------------ 177

Query: 227 KQMSASHLAVTSPRVTGQKRLVRNGCISPHNIASRAQRLAERLRVGSADIGKYHSSNMVS 286
                           G KRLVRNGCISPHNIA+  ++LAE+    + D+ + H  ++ S
Sbjct: 178 ---------------RGHKRLVRNGCISPHNIATMEKQLAEQSNHKTKDVEQSHGHSVSS 222

Query: 287 DGPPTVDIKEVVAEENNCHRAKGKGLVLHSS 317
                V + ++VA E    R KGK ++ + S
Sbjct: 223 STVSPVSVDDIVAGERGNGRGKGKEVLAYRS 253



 Score = 53.5 bits (127), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/43 (65%), Positives = 32/43 (74%), Gaps = 1/43 (2%)

Query: 501 NDDSDARARQVEADEMLARELQEQLYHEVPVFGGSEVCFLLNW 543
           N+ S+ARARQVEADE LARELQEQLYH+ P F G  +   L W
Sbjct: 391 NNSSEARARQVEADERLARELQEQLYHDDP-FEGRGIDEDLAW 432


>Glyma20g18950.1 
          Length = 243

 Score = 53.1 bits (126), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 37/53 (69%), Gaps = 1/53 (1%)

Query: 491 NGNSQGLGSVNDDSDARARQVEADEMLARELQEQLYHEVPVFGGSEVCFLLNW 543
           N +S+ L   ++ S+ARARQ+EADE LARELQEQLYH+ P F G  +   L W
Sbjct: 72  NRSSEDLDDNDNSSEARARQMEADERLARELQEQLYHDDP-FEGRGIDEDLAW 123