Jatropha Genome Database

JcCA0314071.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0314071.20 - phase: 1 /pseudo/partial
         (169 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma17g10570.1                                                       202   1e-52
Glyma17g10570.3                                                        92   2e-19
Glyma17g10570.2                                                        50   9e-07

>Glyma17g10570.1 
          Length = 634

 Score =  202 bits (515), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 99/149 (66%), Positives = 119/149 (79%), Gaps = 1/149 (0%)

Query: 20  KDGKRWGVEEDHPTQGVKELGKSKWSNDLDEDDIEGSERMKGNLNALSGLIQAYGKQGKS 79
           K GK W  EE+HPT+ V+ELGKSKWS D  EDDI+ +E MKGN+NALSGLI  YGK+ KS
Sbjct: 487 KAGKNWHAEEEHPTE-VRELGKSKWSEDFGEDDIDQTEGMKGNINALSGLIHQYGKERKS 545

Query: 80  VRWSDQVGNTGFSIGAAKKAQMLSLVIGPGAGYNLKSNPLPEDEAITTAKAESRRQSAFQ 139
           V W D+ G TGFSIGAA+K   LSLVIGPGAGYNLKSNPLPE+++ T    ES++ S FQ
Sbjct: 546 VHWGDKGGKTGFSIGAARKVNALSLVIGPGAGYNLKSNPLPEEDSPTRNSVESKKHSIFQ 605

Query: 140 ERLRAEHESFKAVFDKRKRRIGRLDLEEE 168
           E++RAE ESFKAVFD+R+ RIG LD+EE+
Sbjct: 606 EQIRAERESFKAVFDRRRHRIGGLDVEED 634


>Glyma17g10570.3 
          Length = 552

 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 44/67 (65%), Positives = 52/67 (77%), Gaps = 1/67 (1%)

Query: 20  KDGKRWGVEEDHPTQGVKELGKSKWSNDLDEDDIEGSERMKGNLNALSGLIQAYGKQGKS 79
           K GK W  EE+HPT+ V+ELGKSKWS D  EDDI+ +E MKGN+NALSGLI  YGK+ KS
Sbjct: 487 KAGKNWHAEEEHPTE-VRELGKSKWSEDFGEDDIDQTEGMKGNINALSGLIHQYGKERKS 545

Query: 80  VRWSDQV 86
           V W D+V
Sbjct: 546 VHWGDKV 552


>Glyma17g10570.2 
          Length = 550

 Score = 50.4 bits (119), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 24/38 (63%), Positives = 29/38 (76%), Gaps = 1/38 (2%)

Query: 20  KDGKRWGVEEDHPTQGVKELGKSKWSNDLDEDDIEGSE 57
           K GK W  EE+HPT+ V+ELGKSKWS D  EDDI+ +E
Sbjct: 487 KAGKNWHAEEEHPTE-VRELGKSKWSEDFGEDDIDQTE 523