Jatropha Genome Database

JcCA0313951.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0313951.20 + phase: 0 /pseudo
         (171 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g11340.1                                                       266   9e-72
Glyma04g43330.1                                                       261   3e-70
Glyma04g13010.1                                                       139   1e-33
Glyma06g11340.2                                                       116   1e-26

>Glyma06g11340.1 
          Length = 467

 Score =  266 bits (679), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 124/144 (86%), Positives = 138/144 (95%)

Query: 1   MESADVFLGLHDFLERMRQPSAADFVKSIKSFIVSFSNNAPDPERDSALVQDFLAKMEAA 60
           ME+ADVFLGLHDFLERMRQPSAA+FVK+IKSFIVSFSNNAPDP+RDSA VQ FLAKMEA 
Sbjct: 1   MENADVFLGLHDFLERMRQPSAAEFVKAIKSFIVSFSNNAPDPDRDSAAVQAFLAKMEAD 60

Query: 61  FRAHPLWAGCSDEELESAGEGLEKYVMTKLFTRVFASIPDDVKVDEQLSEKMSLIQQFIR 120
           FRAHPLWAGCS+EELESAGEGLEKYVMTKLF RVFAS+PDDVK D+QLSEKM+LIQQFIR
Sbjct: 61  FRAHPLWAGCSEEELESAGEGLEKYVMTKLFARVFASLPDDVKFDDQLSEKMALIQQFIR 120

Query: 121 PENLDIKPTFQNETSWLVSRKDIQ 144
           PENLDIKP FQNE+SWL+++K++Q
Sbjct: 121 PENLDIKPVFQNESSWLLAQKELQ 144


>Glyma04g43330.1 
          Length = 443

 Score =  261 bits (667), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 122/144 (84%), Positives = 136/144 (94%)

Query: 1   MESADVFLGLHDFLERMRQPSAADFVKSIKSFIVSFSNNAPDPERDSALVQDFLAKMEAA 60
           ME+ADVFLGLHDFLERMRQPSAA+FVK+IKSFIVSFSNNAPDP+RDSA VQ FLAKMEA 
Sbjct: 1   MENADVFLGLHDFLERMRQPSAAEFVKAIKSFIVSFSNNAPDPDRDSATVQAFLAKMEAD 60

Query: 61  FRAHPLWAGCSDEELESAGEGLEKYVMTKLFTRVFASIPDDVKVDEQLSEKMSLIQQFIR 120
           F AHPLWAGCS+EEL SAGEGLEKYVMTKLF RVFAS+PDDVK D+QLSEKM+LIQQFIR
Sbjct: 61  FSAHPLWAGCSEEELASAGEGLEKYVMTKLFARVFASLPDDVKFDDQLSEKMALIQQFIR 120

Query: 121 PENLDIKPTFQNETSWLVSRKDIQ 144
           PENLDIKP FQNE+SWL+++K++Q
Sbjct: 121 PENLDIKPAFQNESSWLLAQKELQ 144


>Glyma04g13010.1 
          Length = 411

 Score =  139 bits (351), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 71/149 (47%), Positives = 98/149 (65%), Gaps = 10/149 (6%)

Query: 5   DVFLGLHDFLERMRQPSAADFVKSIK----------SFIVSFSNNAPDPERDSALVQDFL 54
           +V    HDFL RMR P++ D V+SIK           FIVSFS + P PE D   VQDF 
Sbjct: 4   EVSTSFHDFLYRMRHPASLDLVRSIKRHIFTHFFQFFFIVSFSFHQPKPENDGKRVQDFF 63

Query: 55  AKMEAAFRAHPLWAGCSDEELESAGEGLEKYVMTKLFTRVFASIPDDVKVDEQLSEKMSL 114
             MEAA R H LW   S+E+++ A +GLEKY+MTKLF+R F++  +D K+D ++S K+ L
Sbjct: 64  VSMEAAIRDHSLWTTASEEDIDCAMQGLEKYIMTKLFSRTFSASAEDAKIDNEISSKICL 123

Query: 115 IQQFIRPENLDIKPTFQNETSWLVSRKDI 143
           +Q F++PE+LDI P  QNE  WL++ K++
Sbjct: 124 LQTFLKPEHLDIPPILQNEALWLLAEKEL 152


>Glyma06g11340.2 
          Length = 427

 Score =  116 bits (290), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 52/64 (81%), Positives = 61/64 (95%)

Query: 81  GLEKYVMTKLFTRVFASIPDDVKVDEQLSEKMSLIQQFIRPENLDIKPTFQNETSWLVSR 140
           GLEKYVMTKLF RVFAS+PDDVK D+QLSEKM+LIQQFIRPENLDIKP FQNE+SWL+++
Sbjct: 41  GLEKYVMTKLFARVFASLPDDVKFDDQLSEKMALIQQFIRPENLDIKPVFQNESSWLLAQ 100

Query: 141 KDIQ 144
           K++Q
Sbjct: 101 KELQ 104