Jatropha Genome Database

JcCA0313071.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0313071.20 - phase: 2 /partial
         (227 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma16g13370.1                                                       182   3e-46

>Glyma16g13370.1 
          Length = 505

 Score =  182 bits (461), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 100/217 (46%), Positives = 137/217 (63%), Gaps = 7/217 (3%)

Query: 4   EEFTITSNDYISPCIMELKRIPECASLVIGHNGFGEFTLWDISRRIFVSRFSTPGTSVCQ 63
           E F I ++  +SP IMELKR+P+C  LV+GHN  GEF+LWDI++   V+ FS   + V +
Sbjct: 282 EYFIIPADGSVSPGIMELKRVPKCTHLVVGHNSRGEFSLWDIAKCNCVTSFSALKSPVNE 341

Query: 64  FCPISWFSWQREVHASNYPNVAAHINRLIDATKVQFSEHSKNHSFPPLKGEDVAIWCLVS 123
           F PIS F WQ +    +  N+    ++L++AT + +SE      F P++ EDVA+W  VS
Sbjct: 342 FFPISLFQWQTKGSGFSNVNIEEQADKLLEATNLWYSEQRDICWFSPIE-EDVAMWLFVS 400

Query: 124 TALNTDAQHKYESSAS--QINPIGWWRLALLVKNTIILGSALDTRVSAIGTSAGHGIIGT 181
           T  + D+ H + S++S   I+    WRLALL+KN+II GS LD R S  G S G+GII T
Sbjct: 401 TTSDLDSCHNHVSTSSSYDIHTARSWRLALLMKNSIIFGSPLDLRTSGNGVSCGYGIIST 460

Query: 182 LDGLVYMWELLTGDKLGTLHKFKGGSVSCIAADDSGS 218
            DG+VYMWEL  G KL TLH F+G    C+A  D+ S
Sbjct: 461 SDGVVYMWELSKGSKLDTLHHFQG----CVAIQDTVS 493