Jatropha Genome Database

JcCA0312871.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0312871.20 + phase: 0 
         (190 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma10g03070.1                                                       268   2e-72

>Glyma10g03070.1 
          Length = 244

 Score =  268 bits (686), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 134/194 (69%), Positives = 154/194 (79%), Gaps = 14/194 (7%)

Query: 6   VLQLIEEGLVSSRLLDPTKADTAKSRGLSIEKKIEFLESLTGKVSNRRSRRWINDRLLME 65
           VL    + L SS  +DP K D AKS G+SIEKKIEFLESLTGKV+NRRSRRW+NDRLLME
Sbjct: 2   VLHRELDHLFSSPFVDPPK-DDAKSSGMSIEKKIEFLESLTGKVTNRRSRRWLNDRLLME 60

Query: 66  LVPRLNAEEIRGLFAPPPWGDDVPLSPFCMTNVGEWEKFRNIDMDKQ------------- 112
           LVPRLNAEEIRGLFAPPPWGD+VP S F MTN+ EW++FRNIDMDK+             
Sbjct: 61  LVPRLNAEEIRGLFAPPPWGDEVPPSTFSMTNMEEWDRFRNIDMDKEVNIIHSLENSIEK 120

Query: 113 RRGRVDADKVAVLNAWRRIDSRTREALRRSFLTDLIEGYEACIRTFIQESGDEEVLALQV 172
           R+G +DADK+AVLN W RID RTR+ALRRS L++LIEGYE C+R FI ES D ++L LQ+
Sbjct: 121 RKGHIDADKMAVLNGWHRIDCRTRDALRRSCLSELIEGYEECVRAFITESTDGDILELQI 180

Query: 173 QDPFHRLLLHGVCE 186
           QDPFHRLLLHGVCE
Sbjct: 181 QDPFHRLLLHGVCE 194