Jatropha Genome Database

JcCA0312601.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0312601.30 + phase: 0 
         (55 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma09g34890.1                                                        75   2e-14
Glyma01g35380.1                                                        75   2e-14

>Glyma09g34890.1 
          Length = 98

 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/42 (85%), Positives = 38/42 (90%)

Query: 1  MTRGKQKIEAQRKNAERNQKAKGSQLEARAVALKVSCPICKV 42
          MTRGKQKIEAQ++NAERNQK KGSQLEARAV LKV CPICK 
Sbjct: 31 MTRGKQKIEAQKRNAERNQKGKGSQLEARAVGLKVICPICKA 72


>Glyma01g35380.1 
          Length = 76

 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/41 (87%), Positives = 38/41 (92%)

Query: 1  MTRGKQKIEAQRKNAERNQKAKGSQLEARAVALKVSCPICK 41
          MTRGKQKIEAQ++NAERNQK KGSQLEARAV LKV CPICK
Sbjct: 36 MTRGKQKIEAQKRNAERNQKGKGSQLEARAVGLKVICPICK 76