Jatropha Genome Database

JcCA0312321.40
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0312321.40 + phase: 0 
         (207 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma19g31570.1                                                       115   4e-26
Glyma03g28860.1                                                       112   3e-25
Glyma11g20890.1                                                        69   4e-12
Glyma11g20890.2                                                        69   4e-12
Glyma04g26020.1                                                        67   2e-11

>Glyma19g31570.1 
          Length = 326

 Score =  115 bits (287), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 52/131 (39%), Positives = 82/131 (62%), Gaps = 9/131 (6%)

Query: 23  IPAWEKQFCFAVGGIRWQDFLRAKKYASEFTKIMEWDDSAGKESFYNAKSRFWAKNGGLP 82
           +PAWE++FC ++G + W+  + +KKY   F  ++ WDDSAGKE+F NAK R+WA+  G+P
Sbjct: 36  VPAWERKFCTSIGSVPWRKLVESKKYMHLFEHVVNWDDSAGKEAFDNAKMRYWAEINGVP 95

Query: 83  FKTPLPSPDIYIDRIDWTAKLDSQLLLDLEKARIYQVRDYEKETEKDRVLL--------K 134
               LP P+IY D +DW A +D QL+LD+E   + +V + E   + + V++        +
Sbjct: 96  CNISLPDPNIYTDEVDWNAIVDPQLILDME-MELAKVPNEELRNDHEIVMIGGALFLNEQ 154

Query: 135 DIKPTGWDIDF 145
            +  TGWD D+
Sbjct: 155 QLPCTGWDDDY 165


>Glyma03g28860.1 
          Length = 346

 Score =  112 bits (280), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 49/131 (37%), Positives = 81/131 (61%), Gaps = 8/131 (6%)

Query: 23  IPAWEKQFCFAVGGIRWQDFLRAKKYASEFTKIMEWDDSAGKESFYNAKSRFWAKNGGLP 82
           +PAWE++FC ++G + W+  + +KKY   F  ++ WDDSAGKE+F NAK+R+WA+  G+P
Sbjct: 36  VPAWERKFCTSIGSVPWRKLVESKKYMHLFEHVVNWDDSAGKEAFDNAKTRYWAEINGVP 95

Query: 83  FKTPLPSPDIYIDRIDWTAKLDSQLLLDLEKARIYQVRDYEKETEKDRVLL--------K 134
                P P+I+ID +DW A +D QL+LD+E        +  ++ + + V++        +
Sbjct: 96  CNISPPDPNIFIDEVDWNATVDPQLILDVETELAKVPNEELRKNDHEIVMIGGALFLNEQ 155

Query: 135 DIKPTGWDIDF 145
            +  TGWD D+
Sbjct: 156 KLPCTGWDDDY 166


>Glyma11g20890.1 
          Length = 300

 Score = 68.6 bits (166), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 54/91 (59%), Gaps = 5/91 (5%)

Query: 52  FTKIMEWDDSAGKESFYNAKSRFWAKNGGLPFKTPLPSPDIYIDRIDWTAKLDSQLLLDL 111
            + + +W+DSA +E+F NAKS +WAK   LP    LP PD YI++IDW+  +D  L+ ++
Sbjct: 6   HSNVFDWNDSAAEEAFQNAKSHYWAKINSLPCDISLPDPDTYINQIDWSPYIDPDLIKEI 65

Query: 112 EKARIYQVRDYEKE----TEKDRVLLKDIKP 138
           + A  + V D E+E     ++ +  L D  P
Sbjct: 66  DGA-FFIVPDEEQENAMKNKRTKTSLNDENP 95


>Glyma11g20890.2 
          Length = 290

 Score = 68.6 bits (166), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 54/91 (59%), Gaps = 5/91 (5%)

Query: 52  FTKIMEWDDSAGKESFYNAKSRFWAKNGGLPFKTPLPSPDIYIDRIDWTAKLDSQLLLDL 111
            + + +W+DSA +E+F NAKS +WAK   LP    LP PD YI++IDW+  +D  L+ ++
Sbjct: 6   HSNVFDWNDSAAEEAFQNAKSHYWAKINSLPCDISLPDPDTYINQIDWSPYIDPDLIKEI 65

Query: 112 EKARIYQVRDYEKE----TEKDRVLLKDIKP 138
           + A  + V D E+E     ++ +  L D  P
Sbjct: 66  DGA-FFIVPDEEQENAMKNKRTKTSLNDENP 95


>Glyma04g26020.1 
          Length = 195

 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 54/96 (56%), Gaps = 2/96 (2%)

Query: 52  FTKIMEWDDSAGKESFYNAKSRFWAKNGGLPFKTPLPSPDIYIDRIDWTAKLDSQLLLDL 111
            + + +W+DSA +E+  NAK+ +WAK   LP    LP PD Y D+IDW   +D  ++ ++
Sbjct: 6   HSNVFDWNDSAAEEALQNAKNHYWAKINSLPCDISLPDPDTYNDQIDWNPYIDPDMIKEI 65

Query: 112 EKARIYQVRDYEKETEKDRVLLKDIKPTGWDIDFQD 147
           +KA  + V D E+ET       K    +G D+D  D
Sbjct: 66  DKA-FFTVPDEEQETAIKNKRTKTSGNSG-DVDNTD 99