Jatropha Genome Database

JcCA0312091.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0312091.20 + phase: 0 /partial
         (120 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g14930.1                                                        97   5e-21

>Glyma06g14930.1 
          Length = 432

 Score = 96.7 bits (239), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 46/65 (70%), Positives = 52/65 (80%)

Query: 44  ERGIVFETGGTFFQHESAKGRDLGVLAASLYKQSKGNLRVLDAMCGCGIRSCRYLIEAKA 103
           ERG+ F  G  FF+ ESA GRDLGVLAASL+K+  G LRVLDA+CGCGIRS RYL EA+A
Sbjct: 49  ERGLEFCAGDAFFRQESATGRDLGVLAASLHKKENGRLRVLDALCGCGIRSLRYLAEAEA 108

Query: 104 DFVLA 108
           DFV A
Sbjct: 109 DFVAA 113