Jatropha Genome Database

JcCA0311881.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0311881.10 + phase: 2 /partial/short
         (44 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g17360.1                                                        55   2e-08
Glyma13g17360.2                                                        55   2e-08
Glyma17g05140.1                                                        53   6e-08

>Glyma13g17360.1 
          Length = 84

 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/41 (60%), Positives = 30/41 (73%)

Query: 1  NMVSLWTCSKVSIIFFVAGVFVGYTLKSRVKRWASKLLKRL 41
            VS WTCSK+    FVAG   GY+L+ RVKRWASK+LK+L
Sbjct: 43 QAVSYWTCSKLCAFCFVAGAVFGYSLRGRVKRWASKMLKKL 83


>Glyma13g17360.2 
          Length = 82

 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/41 (60%), Positives = 30/41 (73%)

Query: 1  NMVSLWTCSKVSIIFFVAGVFVGYTLKSRVKRWASKLLKRL 41
            VS WTCSK+    FVAG   GY+L+ RVKRWASK+LK+L
Sbjct: 41 QAVSYWTCSKLCAFCFVAGAVFGYSLRGRVKRWASKMLKKL 81


>Glyma17g05140.1 
          Length = 128

 Score = 53.1 bits (126), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 25/41 (60%), Positives = 30/41 (73%)

Query: 1   NMVSLWTCSKVSIIFFVAGVFVGYTLKSRVKRWASKLLKRL 41
             VS  TCSK+  I FVAG   GY+L+ RVKRWASK+LK+L
Sbjct: 87  QAVSYLTCSKLCAICFVAGAIFGYSLRGRVKRWASKILKKL 127