Jatropha Genome Database

JcCA0311471.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0311471.10 - phase: 0 /pseudo/partial
         (311 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma07g02340.2                                                       256   2e-68
Glyma07g02340.1                                                       256   3e-68
Glyma08g23680.1                                                       254   1e-67
Glyma16g04520.1                                                        67   3e-11
Glyma19g28920.1                                                        66   4e-11

>Glyma07g02340.2 
          Length = 290

 Score =  256 bits (654), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 119/123 (96%), Positives = 121/123 (98%)

Query: 126 TRAGLFRTPISGGVQSATSAHGLPRPALAVRNLMEQARFAHLCTVMSRMHHRREGYPFGS 185
           TRAGLFRTPISGGVQSATSAHGLPRPALAVRNLMEQARFAHLCTVMSRMHHRREGYPFGS
Sbjct: 20  TRAGLFRTPISGGVQSATSAHGLPRPALAVRNLMEQARFAHLCTVMSRMHHRREGYPFGS 79

Query: 186 LVDFAPDPMGHPIFSFSPLAIHTRNLLADPRCTLVVQIPGWSGLSNARVTIFGDVFPLPE 245
           LVDFAPD  GHPIFSFSPLAIHTRNLLADPRCTLVVQIPGWSGLSNARVTIFGDV+PLPE
Sbjct: 80  LVDFAPDSTGHPIFSFSPLAIHTRNLLADPRCTLVVQIPGWSGLSNARVTIFGDVYPLPE 139

Query: 246 NQQ 248
           +QQ
Sbjct: 140 DQQ 142


>Glyma07g02340.1 
          Length = 381

 Score =  256 bits (654), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 119/123 (96%), Positives = 121/123 (98%)

Query: 126 TRAGLFRTPISGGVQSATSAHGLPRPALAVRNLMEQARFAHLCTVMSRMHHRREGYPFGS 185
           TRAGLFRTPISGGVQSATSAHGLPRPALAVRNLMEQARFAHLCTVMSRMHHRREGYPFGS
Sbjct: 111 TRAGLFRTPISGGVQSATSAHGLPRPALAVRNLMEQARFAHLCTVMSRMHHRREGYPFGS 170

Query: 186 LVDFAPDPMGHPIFSFSPLAIHTRNLLADPRCTLVVQIPGWSGLSNARVTIFGDVFPLPE 245
           LVDFAPD  GHPIFSFSPLAIHTRNLLADPRCTLVVQIPGWSGLSNARVTIFGDV+PLPE
Sbjct: 171 LVDFAPDSTGHPIFSFSPLAIHTRNLLADPRCTLVVQIPGWSGLSNARVTIFGDVYPLPE 230

Query: 246 NQQ 248
           +QQ
Sbjct: 231 DQQ 233


>Glyma08g23680.1 
          Length = 386

 Score =  254 bits (648), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 118/123 (95%), Positives = 121/123 (98%)

Query: 126 TRAGLFRTPISGGVQSATSAHGLPRPALAVRNLMEQARFAHLCTVMSRMHHRREGYPFGS 185
           TRAGLFRTPISGGVQSATSAHGLPRPALAVRNLMEQARFAHLCTVMSRMHHRREGYPFGS
Sbjct: 116 TRAGLFRTPISGGVQSATSAHGLPRPALAVRNLMEQARFAHLCTVMSRMHHRREGYPFGS 175

Query: 186 LVDFAPDPMGHPIFSFSPLAIHTRNLLADPRCTLVVQIPGWSGLSNARVTIFGDVFPLPE 245
           LVDFAPD  GHPIFSFSPLAIHTRNLLADPRCTLVVQIPGWSGLSNARVT+FGDV+PLPE
Sbjct: 176 LVDFAPDSTGHPIFSFSPLAIHTRNLLADPRCTLVVQIPGWSGLSNARVTLFGDVYPLPE 235

Query: 246 NQQ 248
           +QQ
Sbjct: 236 DQQ 238


>Glyma16g04520.1 
          Length = 311

 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 60/101 (59%), Gaps = 5/101 (4%)

Query: 151 PALAVRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFAPDPMGHPIFSFSPLAIHTRN 210
           P   +R +++++    L T   +     +GYP GS+VDFA D  G+PI + S LA+H+++
Sbjct: 88  PVEEIRTVLDRSVRGMLSTFSKKF----DGYPSGSMVDFACDSNGYPILAVSDLAVHSKD 143

Query: 211 LLADPRCTLVVQIPGWSGLSNARVTIFGDVFPLPENQQVVI 251
           L A+P+C+L+V        ++  +T+ GD   +PEN++  +
Sbjct: 144 LTANPKCSLLVARDP-EDRTDLVITVHGDAISVPENEREAV 183


>Glyma19g28920.1 
          Length = 326

 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 60/101 (59%), Gaps = 5/101 (4%)

Query: 151 PALAVRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFAPDPMGHPIFSFSPLAIHTRN 210
           P   +R +++++    L T   +     +GYP GS+VDFA D  G+PI + S LA+H+++
Sbjct: 86  PVEEIRTVLDRSVRGMLSTFSKKF----DGYPSGSMVDFACDSNGYPILAVSDLAVHSKD 141

Query: 211 LLADPRCTLVVQIPGWSGLSNARVTIFGDVFPLPENQQVVI 251
           L A+P+C+L+V        ++  +T+ GD   +PEN++  +
Sbjct: 142 LTANPKCSLLVAR-DPEDRTDLVITVHGDAISVPENEREAV 181