Jatropha Genome Database

JcCA0311301.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0311301.20 + phase: 2 /pseudo/partial
         (162 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma18g46530.1                                                       177   3e-45
Glyma13g39890.1                                                       143   9e-35
Glyma10g33440.1                                                       109   1e-24

>Glyma18g46530.1 
          Length = 380

 Score =  177 bits (450), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 81/119 (68%), Positives = 96/119 (80%)

Query: 35  RGGKHYTIYKCSPRVTKNTPATLTINSFKKGGNGGAPSECDGKYHDDNMPVVALSTGWFN 94
           + GK YT Y+CSP ++ NT A LT+NSF+KGG+GG PSECD +YH D+ PVVALSTGWFN
Sbjct: 142 KEGKMYTTYECSPPMSSNTKAYLTLNSFQKGGDGGGPSECDNQYHSDDTPVVALSTGWFN 201

Query: 95  KMKRCGHHIKIHANGKTVKAMVLDECDSTIGCDSEHSYQPPYPNNIVDASKAVWKALGV 153
              RC H+I I  NG++V AMV+D+CDS  GCD+EH YQPP PNNIVDASKAVWKALGV
Sbjct: 202 HKSRCLHNITISGNGRSVVAMVVDQCDSRKGCDAEHDYQPPCPNNIVDASKAVWKALGV 260


>Glyma13g39890.1 
          Length = 216

 Score =  143 bits (360), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 69/121 (57%), Positives = 85/121 (70%), Gaps = 1/121 (0%)

Query: 36  GGKHYTIYKCSPRVTKNTPATLTINSFKKGGNGGAPSECDGKYHDDNMPVVALSTGWFNK 95
           GGK Y  Y+CSP VT +TPA LT+N F +GG+GG PS+CD K+H++   VVALSTGWFN 
Sbjct: 84  GGKSYPQYRCSPPVTSSTPAILTLNDFSEGGDGGDPSQCDEKFHNNTERVVALSTGWFNG 143

Query: 96  MKRCGHHIKIHA-NGKTVKAMVLDECDSTIGCDSEHSYQPPYPNNIVDASKAVWKALGVK 154
              C   I+I A NG+ V A V+D+CDS  GCD  H+ QPP  NNIVD S+AVW ALG+ 
Sbjct: 144 SSLCLKMIRITAGNGRNVTAKVVDQCDSVNGCDRAHAGQPPCRNNIVDGSQAVWDALGLD 203

Query: 155 E 155
            
Sbjct: 204 S 204


>Glyma10g33440.1 
          Length = 157

 Score =  109 bits (273), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 56/102 (54%), Positives = 71/102 (69%), Gaps = 5/102 (4%)

Query: 53  TPATLTINSFKKGGNGGAPSECDGKYHDDNMPVVALSTGWFNKMKRCGHHIKIHA-NGKT 111
           T ATLT+N+F +GG+GG P+ECDG +H     VVALSTGW+N   RCG  I+I A NG++
Sbjct: 46  THATLTLNNFARGGDGGGPAECDGNFHPLPQRVVALSTGWYNHGARCGKMIRIKARNGRS 105

Query: 112 VKAMVLDECDSTIGCDSEHSYQPPYPNNIVDASKAVWKALGV 153
             A V+DECDS  GCD  H+ +     N+VDASK VWK LG+
Sbjct: 106 TLAKVVDECDSVHGCDKSHACK----TNVVDASKTVWKDLGL 143