Jatropha Genome Database

JcCA0311291.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0311291.20 - phase: 0 
         (344 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g39380.1                                                       396   e-110
Glyma18g19350.1                                                       394   e-110

>Glyma08g39380.1 
          Length = 334

 Score =  396 bits (1018), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 190/295 (64%), Positives = 234/295 (79%), Gaps = 5/295 (1%)

Query: 52  LLQSQISKLAKDNDGATSVG----KEEVLPSALRIDLERQLQNWRENPSWVDQSPEIKVS 107
           +++S++S+LAK  DG + +     K +   S    +L  QLQ WRENPSWVD+ P IKV+
Sbjct: 40  VVKSRLSRLAK-QDGMSLMSSVQRKGDKSFSYSEAELNEQLQAWRENPSWVDKPPLIKVT 98

Query: 108 VPKGSLCNLNVKCNVGLPPDAVYNIVIDPDNRRVFKNIKEVISRKVLLDEGHRQVVEVEQ 167
            PKGSLCNL+V+ +VGLPPDAVYNIVIDPDNRRVFKNIKEV+SRKVL+DEGHRQVV+++Q
Sbjct: 99  APKGSLCNLDVEVDVGLPPDAVYNIVIDPDNRRVFKNIKEVVSRKVLVDEGHRQVVDLDQ 158

Query: 168 AAIWKFLWWSGTISVHVLVDQNRKDLTMKFKQVKTGFMEKFEGCWRVEPVFVDEDICYPF 227
           AAIWKFLWWSGTIS++VLVDQNRKD +MKFKQ K GFM+KFEGCWRVEP+FVDE +C+PF
Sbjct: 159 AAIWKFLWWSGTISINVLVDQNRKDHSMKFKQTKAGFMKKFEGCWRVEPLFVDEAMCHPF 218

Query: 228 KPKTWAEYHSCTRGKGRIGSKVSLEQLIQPTIVPPPPISWYLRGITSRTTEMIVYDLLAE 287
           KP T  +Y++C RGKGRIGSKVSL+Q +QP+IVPPPP+SWYLRGIT+RTTEM++ D+LAE
Sbjct: 219 KPVTKEDYYACARGKGRIGSKVSLKQTLQPSIVPPPPLSWYLRGITARTTEMLINDMLAE 278

Query: 288 AARIRGDLNTVRSEELETSHNSNDECRSGAKSSDIKERWAMHRSAKKHLRRRLLT 342
            ARIRG     +S+  E      +     + +SDIKERW + R   KH  RRLLT
Sbjct: 279 TARIRGGYEAEKSKAEELQGKPGENVDLVSNTSDIKERWKLRRENAKHSHRRLLT 333


>Glyma18g19350.1 
          Length = 329

 Score =  394 bits (1012), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 194/296 (65%), Positives = 237/296 (80%), Gaps = 8/296 (2%)

Query: 52  LLQSQISKLAKDNDGAT---SVGKEEVLPSALRIDLERQLQNWRENPSWVDQSPEIKVSV 108
           +++SQ+S+LAK  DG +   SV ++    S    +L  QLQ WRENPSWVD+ P IKV+V
Sbjct: 36  VVKSQLSRLAK-QDGMSLMRSVQRKGGSFSYSEAELNEQLQAWRENPSWVDKPPLIKVTV 94

Query: 109 PKGSLCNLNVKCNVGLPPDAVYNIVIDPDNRRVFKNIKEVISRKVLLDEGHRQVVEVEQA 168
           PKGSLCNL+V+ +VGLPPDAVYNIVIDPDNRRVFKNIKEV+SRKVL+D+GHRQVV+++QA
Sbjct: 95  PKGSLCNLDVEVDVGLPPDAVYNIVIDPDNRRVFKNIKEVVSRKVLVDQGHRQVVDLDQA 154

Query: 169 AIWKFLWWSGTISVHVLVDQNRKDLTMKFKQVKTGFMEKFEGCWRVEPVFVDEDICYPFK 228
           AIWKFLWWSGTIS++VLVDQNRKD +MKF Q K GFM+KFEGCWRVEP+FVDE +C+PFK
Sbjct: 155 AIWKFLWWSGTISINVLVDQNRKDHSMKFMQTKAGFMKKFEGCWRVEPLFVDEAMCHPFK 214

Query: 229 PKTWAEYHSCTRGKGRIGSKVSLEQLIQPTIVPPPPISWYLRGITSRTTEMIVYDLLAEA 288
           P T  +Y++CTRGKGRIGSKVSLEQ++QP+IVPPPP+SWYLRGIT+RTTEM++ D+LAE 
Sbjct: 215 PVTKEDYNACTRGKGRIGSKVSLEQILQPSIVPPPPLSWYLRGITARTTEMLINDMLAET 274

Query: 289 ARIRGDLNTVRS--EELETSHNSNDECRSGAKSSDIKERWAMHRSAKKHLRRRLLT 342
           ARIRG     +S  EEL+     N +  S   +SDIKE W + R   K   R LLT
Sbjct: 275 ARIRGGYEAEKSKAEELQVKPGENVDLVSN--TSDIKESWKLRRKNAKQSHRSLLT 328