Jatropha Genome Database

JcCA0311161.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0311161.20 + phase: 1 /pseudo/partial
         (114 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma09g04620.1                                                       105   1e-23
Glyma15g16270.1                                                       104   3e-23
Glyma20g38200.1                                                        79   1e-15

>Glyma09g04620.1 
          Length = 1126

 Score =  105 bits (261), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 52/71 (73%), Positives = 58/71 (81%)

Query: 26  IFDELPKATIVSVSKPDTGDISLILLSYTIELQFKQFHWRLVKKASQVLNLHFALKKRAM 85
           IF+ELPKA IVSVS+PD  DIS + LSYTI++Q+KQF W L KKA QV  LHFALKKRA 
Sbjct: 52  IFEELPKAAIVSVSRPDASDISPMQLSYTIQVQYKQFKWELTKKAHQVFILHFALKKRAF 111

Query: 86  IEEFHEKQEQV 96
           IEE HEKQEQV
Sbjct: 112 IEEIHEKQEQV 122


>Glyma15g16270.1 
          Length = 1123

 Score =  104 bits (259), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 51/71 (71%), Positives = 59/71 (83%)

Query: 26  IFDELPKATIVSVSKPDTGDISLILLSYTIELQFKQFHWRLVKKASQVLNLHFALKKRAM 85
           IF+ELPKA+IVSVS+PD  DIS + LSYTI++Q+KQF W L KKA QV  LHF+LKKRA 
Sbjct: 49  IFEELPKASIVSVSRPDASDISPMQLSYTIQVQYKQFKWELTKKAHQVFILHFSLKKRAF 108

Query: 86  IEEFHEKQEQV 96
           IEE HEKQEQV
Sbjct: 109 IEEIHEKQEQV 119


>Glyma20g38200.1 
          Length = 1132

 Score = 78.6 bits (192), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/145 (36%), Positives = 67/145 (46%), Gaps = 57/145 (39%)

Query: 9   AMLHQSYSLRQFPQLCWIFDELPKATIVSVSKPDTGDISLILLS---------------- 52
           A+    +  R+  +  WIF+ELP ATIVSVS+P+TGDIS ILLS                
Sbjct: 12  ALPESHHPSRRCGEPAWIFEELPTATIVSVSRPETGDISPILLSYTIELQYKQAPTFLSL 71

Query: 53  -------------------------YTIELQFKQ----------------FHWRLVKKAS 71
                                    Y+  L  K                 F WRLVKKAS
Sbjct: 72  WSKLYWQSCHVLSREYHYFCSFVEYYSANLSGKDKRTAVVLFCQVIFNGVFKWRLVKKAS 131

Query: 72  QVLNLHFALKKRAMIEEFHEKQEQV 96
           Q+L L F L+KRA+IE+FH+KQEQ+
Sbjct: 132 QLLYLQFCLRKRALIEDFHDKQEQL 156