Jatropha Genome Database

JcCA0311161.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0311161.10 + phase: 0 
         (272 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma10g29120.1                                                       321   6e-88
Glyma10g29120.2                                                       196   3e-50
Glyma20g38190.1                                                       156   3e-38

>Glyma10g29120.1 
          Length = 255

 Score =  321 bits (822), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 173/270 (64%), Positives = 190/270 (70%), Gaps = 19/270 (7%)

Query: 3   LSQNLKPXXXXXXXXXXXXXXXXFPLSLKTQTDLSFFSTIPSSIHNLQRPLPILSRRVFL 62
           +S NLKP                FPL L  +   S              PL +L+RR+FL
Sbjct: 5   ISHNLKPGGIMVSPSLHHRSS--FPLQLSLKAPFS-----------ASHPL-VLTRRLFL 50

Query: 63  PSVSGIWDALTGGGGNNPRQAVLKIRRGMSLFREGDVLGSLAEFDKAIELDSRQKACRFD 122
           PSVSGIWDALTGG  NN R+AVL IRRGM LFR+GDV GSLAEFDKAI+LD RQKA    
Sbjct: 51  PSVSGIWDALTGGNNNNAREAVLAIRRGMLLFRQGDVSGSLAEFDKAIQLDPRQKAY--- 107

Query: 123 LWQRGLSLYYLDRFEEGAKQFRLDVAQNPNDTEESIWCFLCEAQLYGVDEARKRFLEVGR 182
           LWQRGLSLYYL+RFEE A+QFRLDVAQNPNDTEESIWCFLCEAQL+GVDEARKR+LEV  
Sbjct: 108 LWQRGLSLYYLNRFEEAAEQFRLDVAQNPNDTEESIWCFLCEAQLFGVDEARKRYLEVAE 167

Query: 183 DPRPVMREAYNMFKDGGDPEKLVTAFSNGSENEYFYASLYAGLYHESQKKLDAAKFHIVA 242
                    Y MFK  G   KLV AFS   E EYFYASLYAGLY+ESQ   DAAK HIVA
Sbjct: 168 TQASHAGSIY-MFKMVG-IRKLVAAFSGSREGEYFYASLYAGLYYESQNGTDAAKVHIVA 225

Query: 243 ACKSLYGQRSDDYMAALSKVHCLCRNWSID 272
           AC+S YGQRSDDYMA+L+KVHC CRNW  +
Sbjct: 226 ACQSPYGQRSDDYMASLAKVHCRCRNWVFN 255


>Glyma10g29120.2 
          Length = 149

 Score =  196 bits (497), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 99/141 (70%), Positives = 108/141 (76%), Gaps = 2/141 (1%)

Query: 132 YLDRFEEGAKQFRLDVAQNPNDTEESIWCFLCEAQLYGVDEARKRFLEVGRDPRPVMREA 191
           +  RFEE A+QFRLDVAQNPNDTEESIWCFLCEAQL+GVDEARKR+LEV           
Sbjct: 11  FCRRFEEAAEQFRLDVAQNPNDTEESIWCFLCEAQLFGVDEARKRYLEVAETQASHAGSI 70

Query: 192 YNMFKDGGDPEKLVTAFSNGSENEYFYASLYAGLYHESQKKLDAAKFHIVAACKSLYGQR 251
           Y MFK  G   KLV AFS   E EYFYASLYAGLY+ESQ   DAAK HIVAAC+S YGQR
Sbjct: 71  Y-MFKMVG-IRKLVAAFSGSREGEYFYASLYAGLYYESQNGTDAAKVHIVAACQSPYGQR 128

Query: 252 SDDYMAALSKVHCLCRNWSID 272
           SDDYMA+L+KVHC CRNW  +
Sbjct: 129 SDDYMASLAKVHCRCRNWVFN 149


>Glyma20g38190.1 
          Length = 103

 Score =  156 bits (394), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 72/91 (79%), Positives = 79/91 (86%)

Query: 179 EVGRDPRPVMREAYNMFKDGGDPEKLVTAFSNGSENEYFYASLYAGLYHESQKKLDAAKF 238
           +VGRDP PVMREAYNMF DGGDPEKLV AFS   E EYFYASLYAGLY+ES+ + DAAK 
Sbjct: 10  QVGRDPWPVMREAYNMFIDGGDPEKLVAAFSGSREGEYFYASLYAGLYYESENETDAAKV 69

Query: 239 HIVAACKSLYGQRSDDYMAALSKVHCLCRNW 269
           HIVAAC+S YGQRSDDYMA+L+KVHC CRNW
Sbjct: 70  HIVAACQSPYGQRSDDYMASLAKVHCPCRNW 100