Jatropha Genome Database

JcCA0310371.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0310371.10 - phase: 0 
         (176 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g07500.1                                                       166   8e-42
Glyma05g08210.1                                                       160   9e-40
Glyma17g12760.1                                                       158   3e-39
Glyma04g07200.1                                                        65   4e-11
Glyma06g07300.1                                                        61   5e-10
Glyma15g21130.1                                                        54   6e-08

>Glyma06g07500.1 
          Length = 140

 Score =  166 bits (421), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 81/125 (64%), Positives = 97/125 (77%), Gaps = 1/125 (0%)

Query: 53  IATLF-PVSHGDVGTAAHYSPPYLPTACYGNDESQFPSSNLFAAASEGIWDNGAACGRQY 111
           ++TLF   S  DVGTAA Y PP+LPT C+G D SQFPSSN+FAAA EGIWDNGAACGRQY
Sbjct: 15  LSTLFIHYSLADVGTAAQYGPPFLPTTCFGRDASQFPSSNMFAAAGEGIWDNGAACGRQY 74

Query: 112 LVRCISAVAPNTCNREKIIRVRIVDRAQTSVSRPSRNGATIILSDIAFAQIASPSVSSVN 171
            VRCISA AP TC   + I+++IVDRAQ+SVSRPS  G +++LS  AF  IA+ S S +N
Sbjct: 75  QVRCISAAAPRTCVPGQTIQIKIVDRAQSSVSRPSLGGTSMVLSVTAFQAIANVSASFIN 134

Query: 172 VEFQQ 176
           +EFQQ
Sbjct: 135 IEFQQ 139


>Glyma05g08210.1 
          Length = 144

 Score =  160 bits (404), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 75/121 (61%), Positives = 93/121 (76%)

Query: 56  LFPVSHGDVGTAAHYSPPYLPTACYGNDESQFPSSNLFAAASEGIWDNGAACGRQYLVRC 115
           L   S+ DVGTA+ YSPPYLP+ CYG + +QFPSSNLFAAA +GIWDNGAACGRQYLVRC
Sbjct: 23  LLHHSNADVGTASRYSPPYLPSGCYGTEATQFPSSNLFAAAGDGIWDNGAACGRQYLVRC 82

Query: 116 ISAVAPNTCNREKIIRVRIVDRAQTSVSRPSRNGATIILSDIAFAQIASPSVSSVNVEFQ 175
           ISA  P TC  ++ I+++IVD A T+VS  S  G T++LSD AF  IA+ S + +N+EFQ
Sbjct: 83  ISAEQPRTCIPDQSIQIKIVDYAATAVSPASAGGTTMVLSDKAFGTIANTSAALINIEFQ 142

Query: 176 Q 176
           Q
Sbjct: 143 Q 143


>Glyma17g12760.1 
          Length = 144

 Score =  158 bits (399), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 77/126 (61%), Positives = 95/126 (75%), Gaps = 4/126 (3%)

Query: 55  TLFPV----SHGDVGTAAHYSPPYLPTACYGNDESQFPSSNLFAAASEGIWDNGAACGRQ 110
           TLF V    S+ DVGTA+ YSPPYLP+ CYG + +QFPSSNLFAAA +GIWDNGAACGRQ
Sbjct: 18  TLFIVLLHHSNADVGTASRYSPPYLPSGCYGTEATQFPSSNLFAAAGDGIWDNGAACGRQ 77

Query: 111 YLVRCISAVAPNTCNREKIIRVRIVDRAQTSVSRPSRNGATIILSDIAFAQIASPSVSSV 170
           YLVRCISA  P TC  ++ I+++IVD A T+VS  S  G T++LSD AF  IA+ S + +
Sbjct: 78  YLVRCISAEQPRTCIPDQSIQIKIVDYAATAVSPASAGGTTMVLSDKAFGTIANMSATLI 137

Query: 171 NVEFQQ 176
           N+E QQ
Sbjct: 138 NIELQQ 143


>Glyma04g07200.1 
          Length = 159

 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 31/42 (73%)

Query: 77  TACYGNDESQFPSSNLFAAASEGIWDNGAACGRQYLVRCISA 118
           TAC GN   +FP  NLF A  EG+WDNGAACGR+Y +RC+S 
Sbjct: 1   TACDGNRPGKFPPGNLFVAVIEGLWDNGAACGRRYRIRCVSG 42


>Glyma06g07300.1 
          Length = 81

 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 36/85 (42%), Positives = 51/85 (60%), Gaps = 7/85 (8%)

Query: 90  SNLFAAASEGIWDNGAACGRQYLVRCISAVAPNTCNREKIIRVRIVDRAQTSVSRPSRNG 149
            NLF A +EG+WDNGAACGR+Y +RC+S    N   +   I V++VD    S   P  N 
Sbjct: 2   GNLFVAVNEGLWDNGAACGRRYRIRCVS--GNNRPCKGGSIDVKVVDSCSRS---PCPN- 55

Query: 150 ATIILSDIAFAQIASPSVSSVNVEF 174
            T+++S+ AFA IA      +N+E+
Sbjct: 56  -TLLMSNDAFAAIARFPHVKINIEY 79


>Glyma15g21130.1 
          Length = 81

 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 7/84 (8%)

Query: 91  NLFAAASEGIWDNGAACGRQYLVRCISAVAPNTCNREKIIRVRIVDRAQTSVSRPSRNGA 150
           NLF   +EG+WDNGA CGR+Y + C+S    N   +   I V++VD    S   P  N  
Sbjct: 3   NLFVTVNEGLWDNGAVCGRRYKISCVS--GNNRPCKGGSINVKVVDSCSRS---PCPN-- 55

Query: 151 TIILSDIAFAQIASPSVSSVNVEF 174
           T+++S  AF  I+    + +N+E+
Sbjct: 56  TLLMSKDAFVAISHFPHAKINIEY 79