Jatropha Genome Database

JcCA0309871.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0309871.10 + phase: 0 
         (70 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma17g13690.1                                                        64   5e-11
Glyma05g03030.1                                                        60   6e-10

>Glyma17g13690.1 
          Length = 69

 Score = 63.5 bits (153), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 31/38 (81%), Positives = 33/38 (86%), Gaps = 1/38 (2%)

Query: 33 CNKGKTCKFKRSSSNLEDDGASSAIFLLACIACTTPSY 70
          CNKGK  KFKRSSSNLE+DGASSAI  LACIAC +PSY
Sbjct: 32 CNKGKAGKFKRSSSNLEEDGASSAILFLACIAC-SPSY 68


>Glyma05g03030.1 
          Length = 69

 Score = 59.7 bits (143), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 30/38 (78%), Positives = 31/38 (81%), Gaps = 1/38 (2%)

Query: 33 CNKGKTCKFKRSSSNLEDDGASSAIFLLACIACTTPSY 70
          CNKGK  KFKRSSSNLE+DGASSAI  LACIA   PSY
Sbjct: 32 CNKGKAGKFKRSSSNLEEDGASSAILFLACIA-YAPSY 68