Jatropha Genome Database

JcCA0309861.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0309861.10 + phase: 0 
         (214 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma17g02100.1                                                        60   2e-09
Glyma08g10360.1                                                        55   8e-08

>Glyma17g02100.1 
          Length = 394

 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 79/171 (46%), Gaps = 11/171 (6%)

Query: 27  KFQHLPDSIIVEILSRLPSEQLSNCQLVCRKFRDLTSTPYFREIHSVKRASPIVLVQYFN 86
           K   LP  +I EIL RLP + L   + VC+ +    S P+F   H    A+P   + + +
Sbjct: 28  KMVDLPQELIHEILLRLPVKSLIRFKTVCKSWLSHISDPHFTASHFKLGAAPTERLLFLS 87

Query: 87  PGIHDKDMQVYLLDEKTKDENQK--LNCT-GRFFMYCLILCSCNGLILFDSRCKLCINNP 143
           P    ++      +E   D++    LNC     F Y  I+ SC G +L D R  LC+ NP
Sbjct: 88  PIA--REFLSIDFNESLNDDSASAALNCDFVEHFDYLEIIGSCRGFLLLDFRYTLCVWNP 145

Query: 144 LTAELIFLK-NPYQSG---GFGCGFYFHTSEKEYRLLYLHSKSNYLSILYA 190
            T    F+K +P+ S    G   G  F  S + +   Y  S  +YL++L +
Sbjct: 146 STGVHQFVKWSPFVSSNIMGLDVGDEFSLSIRGFG--YDPSTDDYLAVLAS 194


>Glyma08g10360.1 
          Length = 363

 Score = 54.7 bits (130), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 63/158 (39%), Gaps = 11/158 (6%)

Query: 31  LPDSIIVEILSRLPSEQLSNCQLVCRKFRDLTSTPYFREIH---SVKRASPIVLVQYFNP 87
           LP  +I EIL RLP + L   + VC+ +  L S P F + H   +   A  I+ +    P
Sbjct: 3   LPQDLITEILLRLPVKSLVRFKSVCKSWLFLISDPRFAKSHFELAAALADRILFIASSAP 62

Query: 88  GIHDKDMQVYLLDEKTKDE-NQKLNCTGRFFMYCLILCSCNGLILFDSRCKLCINNPLTA 146
            +   D    L D+         L     +F +  I+ SC G IL      LC+ NP T 
Sbjct: 63  ELRSIDFNASLHDDSASVAVTVDLPAPKPYFHFVEIIGSCRGFILLHCLSHLCVWNPTTG 122

Query: 147 -------ELIFLKNPYQSGGFGCGFYFHTSEKEYRLLY 177
                    IF           CGF +  S  +Y +++
Sbjct: 123 VHKVVPLSPIFFNKDAVFFTLLCGFGYDPSTDDYLVVH 160