Jatropha Genome Database

JcCA0309351.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0309351.30 + phase: 0 /partial/short
         (43 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g01310.3                                                        74   4e-14
Glyma06g01310.1                                                        74   4e-14
Glyma12g04510.2                                                        74   4e-14
Glyma12g04510.1                                                        74   4e-14
Glyma04g01270.1                                                        74   4e-14
Glyma11g12300.1                                                        74   4e-14

>Glyma06g01310.3 
          Length = 107

 Score = 73.9 bits (180), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 34/38 (89%), Positives = 38/38 (100%)

Query: 6   RINGSLARRAIKDLMARGSIRMISAHASQQIYTRATNT 43
           RINGSLAR+AI++LMARGSIRM+SAHASQQIYTRATNT
Sbjct: 70  RINGSLARKAIRELMARGSIRMVSAHASQQIYTRATNT 107


>Glyma06g01310.1 
          Length = 108

 Score = 73.9 bits (180), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 34/38 (89%), Positives = 38/38 (100%)

Query: 6   RINGSLARRAIKDLMARGSIRMISAHASQQIYTRATNT 43
           RINGSLAR+AI++LMARGSIRM+SAHASQQIYTRATNT
Sbjct: 71  RINGSLARKAIRELMARGSIRMVSAHASQQIYTRATNT 108


>Glyma12g04510.2 
          Length = 108

 Score = 73.6 bits (179), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 34/38 (89%), Positives = 38/38 (100%)

Query: 6   RINGSLARRAIKDLMARGSIRMISAHASQQIYTRATNT 43
           RINGSLAR+AI++LMARGSIRM+SAHASQQIYTRATNT
Sbjct: 71  RINGSLARKAIRELMARGSIRMVSAHASQQIYTRATNT 108


>Glyma12g04510.1 
          Length = 108

 Score = 73.6 bits (179), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 34/38 (89%), Positives = 38/38 (100%)

Query: 6   RINGSLARRAIKDLMARGSIRMISAHASQQIYTRATNT 43
           RINGSLAR+AI++LMARGSIRM+SAHASQQIYTRATNT
Sbjct: 71  RINGSLARKAIRELMARGSIRMVSAHASQQIYTRATNT 108


>Glyma04g01270.1 
          Length = 108

 Score = 73.6 bits (179), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 34/38 (89%), Positives = 38/38 (100%)

Query: 6   RINGSLARRAIKDLMARGSIRMISAHASQQIYTRATNT 43
           RINGSLAR+AI++LMARGSIRM+SAHASQQIYTRATNT
Sbjct: 71  RINGSLARKAIRELMARGSIRMVSAHASQQIYTRATNT 108


>Glyma11g12300.1 
          Length = 108

 Score = 73.6 bits (179), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 34/38 (89%), Positives = 38/38 (100%)

Query: 6   RINGSLARRAIKDLMARGSIRMISAHASQQIYTRATNT 43
           RINGSLAR+AI++LMARGSIRM+SAHASQQIYTRATNT
Sbjct: 71  RINGSLARKAIRELMARGSIRMVSAHASQQIYTRATNT 108