Jatropha Genome Database

JcCA0309221.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0309221.20 + phase: 0 /partial
         (178 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma20g37580.1                                                        78   6e-15
Glyma20g07510.1                                                        56   3e-08

>Glyma20g37580.1 
          Length = 337

 Score = 77.8 bits (190), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 40/77 (51%), Positives = 50/77 (64%), Gaps = 3/77 (3%)

Query: 105 DVKGGCLYGSNLSQKPPRKYKGVQVFTYKELEVATERFSEAXXXXXXXX---XXXXXXXL 161
           DVK GCL G NLS+ P  K++GVQVFTY+ELE+AT+ FSEA                  L
Sbjct: 1   DVKSGCLNGGNLSRTPAPKFRGVQVFTYRELEIATDGFSEANVIGSNGIGGHGLMYRGVL 60

Query: 162 ADGTVAAVKMLRREGKQ 178
           +DGT+AA+K+L  EGKQ
Sbjct: 61  SDGTMAAIKLLHTEGKQ 77


>Glyma20g07510.1 
          Length = 62

 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 24/40 (60%), Positives = 32/40 (80%)

Query: 106 VKGGCLYGSNLSQKPPRKYKGVQVFTYKELEVATERFSEA 145
           VK GCL+  NL++ P  K++GVQVFTY+ELE+ T+ FSEA
Sbjct: 1   VKSGCLHEGNLNRTPAPKFRGVQVFTYRELEIVTDGFSEA 40