Jatropha Genome Database

JcCA0308831.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0308831.20 + phase: 0 
         (122 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma09g08170.1                                                       116   5e-27
Glyma09g08170.2                                                       116   5e-27
Glyma09g08160.1                                                        55   2e-08
Glyma16g22650.1                                                        54   4e-08
Glyma02g04800.1                                                        53   6e-08

>Glyma09g08170.1 
          Length = 358

 Score =  116 bits (291), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 58/91 (63%), Positives = 71/91 (78%), Gaps = 2/91 (2%)

Query: 28  PISPDLLELPPATSLPTNKRLQEVIRLGEGTLEGPEDVCVDRDGVLYTASRDGWIKRL-H 86
           PI P LL++ PA S   N+ LQ +I+LGEG L+ PEDV VD++G LYTA+RDGWIKRL  
Sbjct: 29  PIDPVLLDIKPAPSTKDNQ-LQNIIKLGEGLLKEPEDVVVDKEGTLYTATRDGWIKRLRR 87

Query: 87  SNGTWDNWKKIDSNGLLGITISKEGGLIVCD 117
           +NG W+NWK IDS+ LLGI  +KEGGLIVCD
Sbjct: 88  NNGKWENWKHIDSHTLLGIATAKEGGLIVCD 118


>Glyma09g08170.2 
          Length = 279

 Score =  116 bits (291), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 58/91 (63%), Positives = 71/91 (78%), Gaps = 2/91 (2%)

Query: 28  PISPDLLELPPATSLPTNKRLQEVIRLGEGTLEGPEDVCVDRDGVLYTASRDGWIKRL-H 86
           PI P LL++ PA S   N+ LQ +I+LGEG L+ PEDV VD++G LYTA+RDGWIKRL  
Sbjct: 29  PIDPVLLDIKPAPSTKDNQ-LQNIIKLGEGLLKEPEDVVVDKEGTLYTATRDGWIKRLRR 87

Query: 87  SNGTWDNWKKIDSNGLLGITISKEGGLIVCD 117
           +NG W+NWK IDS+ LLGI  +KEGGLIVCD
Sbjct: 88  NNGKWENWKHIDSHTLLGIATAKEGGLIVCD 118


>Glyma09g08160.1 
          Length = 245

 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/39 (64%), Positives = 31/39 (79%), Gaps = 1/39 (2%)

Query: 80  GWIKRLHSN-GTWDNWKKIDSNGLLGITISKEGGLIVCD 117
           GWIKRL  N G W+NWK +DS+ L+GIT +KE G+IVCD
Sbjct: 1   GWIKRLRRNKGNWENWKHMDSDTLIGITTAKEVGIIVCD 39


>Glyma16g22650.1 
          Length = 378

 Score = 53.9 bits (128), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/74 (43%), Positives = 44/74 (59%), Gaps = 9/74 (12%)

Query: 53  RLGEGTLEGPEDVCVDRDG-VLYTASRDGWIKRLHSNGT-----WDNWKKIDSNGL-LGI 105
           R+GEG LEGPED+  D    V+YT   DGWIKR+  N +      ++W  +++ G  LG+
Sbjct: 69  RVGEGHLEGPEDLAYDAAARVVYTGCEDGWIKRVTVNDSVVDSAVEDW--VNTGGRPLGL 126

Query: 106 TISKEGGLIVCDAE 119
            +   G LIV DAE
Sbjct: 127 VLKPNGELIVADAE 140


>Glyma02g04800.1 
          Length = 367

 Score = 53.1 bits (126), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 32/73 (43%), Positives = 44/73 (60%), Gaps = 9/73 (12%)

Query: 54  LGEGTLEGPEDVCVDRDG-VLYTASRDGWIKRLHSNGT-----WDNWKKIDSNGL-LGIT 106
           +GEG LEGPED+  D    V+YT   DGWIKR+  N +      ++W  +++ G  LG+T
Sbjct: 59  MGEGHLEGPEDLAYDAAARVVYTGCEDGWIKRVTVNDSVLDSAVEDW--VNTGGRPLGLT 116

Query: 107 ISKEGGLIVCDAE 119
           +   G LIV DAE
Sbjct: 117 LKPNGELIVADAE 129