Jatropha Genome Database

JcCA0308501.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0308501.20 + phase: 0 /pseudo/partial
         (226 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma20g36400.1                                                       182   3e-46
Glyma10g31070.1                                                       170   9e-43

>Glyma20g36400.1 
          Length = 307

 Score =  182 bits (461), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 89/135 (65%), Positives = 100/135 (74%), Gaps = 9/135 (6%)

Query: 80  PSDYFKQLPRDLRLDLNDAAFDLSNGPVIDECGQELGELLLNLSRAWELADTSTSRDLAS 139
           PSDYF +LP DLRLDLNDAAFDLSNGPV+DECGQELGE LLNLSRAWELADTSTS  L  
Sbjct: 82  PSDYFSKLPGDLRLDLNDAAFDLSNGPVLDECGQELGETLLNLSRAWELADTSTSHSLVK 141

Query: 140 KLPMLE---------TFGKRLVSAGRRFQSMGQYGQGEMQKVAQAMIRTGKLLSANPIXX 190
           KLP++E           GKRLVSAGRRFQSMGQYGQGE+QK+A+AMI  G++L+A+    
Sbjct: 142 KLPLIEAKLTGYAKSALGKRLVSAGRRFQSMGQYGQGELQKIAKAMIAAGRVLTASSTSA 201

Query: 191 XXXXXXXXXXRVFKF 205
                     RV KF
Sbjct: 202 VIVEEPKEEARVLKF 216


>Glyma10g31070.1 
          Length = 343

 Score =  170 bits (431), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 86/134 (64%), Positives = 96/134 (71%), Gaps = 9/134 (6%)

Query: 80  PSDYFKQLPRDLRLDLNDAAFDLSNGPVIDECGQELGELLLNLSRAWELADTSTSRDLAS 139
           PSDYF +LPRDLRLDLNDAAF LS+GPV+DECGQELGE LLNLSRAWELADTSTS  L  
Sbjct: 192 PSDYFAKLPRDLRLDLNDAAFHLSSGPVLDECGQELGETLLNLSRAWELADTSTSHSLVK 251

Query: 140 KLPMLE---------TFGKRLVSAGRRFQSMGQYGQGEMQKVAQAMIRTGKLLSANPIXX 190
           KLP++E           GK LVSAGRRFQSMGQYGQGE QK+A+A+I  G+ LSA+    
Sbjct: 252 KLPLIEAKLTGSAKSALGKHLVSAGRRFQSMGQYGQGEPQKIAKAVIAAGRALSASSTSA 311

Query: 191 XXXXXXXXXXRVFK 204
                     RV K
Sbjct: 312 VIVEELKEETRVLK 325