Jatropha Genome Database

JcCA0308421.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0308421.20 + phase: 0 /partial
         (210 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma17g04920.1                                                       308   2e-84
Glyma13g17580.1                                                       285   3e-77

>Glyma17g04920.1 
          Length = 1048

 Score =  308 bits (789), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 147/210 (70%), Positives = 170/210 (80%)

Query: 1   QLQDLTRKGCPLVGIADITCDVGGSIEFINETTSIDCPFFRYEPLNDSYHHDMDGNGLIC 60
           Q+QDL  +G PLVGIADITCD+GGSIEF+N +TSID PFFRY+PL +SYH DM+GNG+IC
Sbjct: 318 QMQDLMGRGSPLVGIADITCDIGGSIEFVNRSTSIDSPFFRYDPLTNSYHDDMEGNGVIC 377

Query: 61  SSVDILPTEFAKEASQHFGDILSQFIGSLVSTTDITKLPSHLRRACIAHGGAPTPMFEYI 120
            +VDILPTEFAKEASQHFG+ILSQF+ +L S TDITKLP+HLRRACIAH G  T +++YI
Sbjct: 378 LAVDILPTEFAKEASQHFGNILSQFVVNLASATDITKLPAHLRRACIAHKGVLTSLYDYI 437

Query: 121 PRMRNSESEDMRENPVXXXXXXXXXXXXXXXXGHLFDQFLINEALDIIEAAGGSFHLVKC 180
           PRMR+S+SE++ EN                  GHLFDQFLINEALDIIEAAGGSFHLV C
Sbjct: 438 PRMRSSDSEEVSENSENSLSNKRKYNISVSLSGHLFDQFLINEALDIIEAAGGSFHLVNC 497

Query: 181 HVGQSANTPSYSELEVGADDREVLDQIIDS 210
           HVGQS    S+SELEVGAD+R VLDQIIDS
Sbjct: 498 HVGQSIEAVSFSELEVGADNRAVLDQIIDS 527


>Glyma13g17580.1 
          Length = 966

 Score =  285 bits (728), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 134/195 (68%), Positives = 156/195 (80%)

Query: 1   QLQDLTRKGCPLVGIADITCDVGGSIEFINETTSIDCPFFRYEPLNDSYHHDMDGNGLIC 60
           Q+QDL  +GCPLVGIADITCD+GGSIEF+N  TSID PFFRY+PL +SYH DM+GNG+IC
Sbjct: 388 QMQDLMSQGCPLVGIADITCDIGGSIEFVNRATSIDSPFFRYDPLTNSYHDDMEGNGVIC 447

Query: 61  SSVDILPTEFAKEASQHFGDILSQFIGSLVSTTDITKLPSHLRRACIAHGGAPTPMFEYI 120
            +VDILPTEFAKEASQHFG+ILSQF+ +L S TDITKLP+HLRRACIA+ G  T +++YI
Sbjct: 448 LAVDILPTEFAKEASQHFGNILSQFVINLASATDITKLPAHLRRACIANKGVLTSLYDYI 507

Query: 121 PRMRNSESEDMRENPVXXXXXXXXXXXXXXXXGHLFDQFLINEALDIIEAAGGSFHLVKC 180
           PRMR+S+SE++ EN                  GHLFDQFLINEALDIIEAAGGSFHLV C
Sbjct: 508 PRMRSSDSEEVSENAENSLSNKRKYNISVSLSGHLFDQFLINEALDIIEAAGGSFHLVNC 567

Query: 181 HVGQSANTPSYSELE 195
           HVGQS    S+SELE
Sbjct: 568 HVGQSVEAVSFSELE 582