Jatropha Genome Database

JcCA0308351.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0308351.20 - phase: 0 /pseudo/partial
         (220 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma09g40460.1                                                       296   1e-80
Glyma18g45380.1                                                       293   1e-79
Glyma03g02530.1                                                       261   3e-70
Glyma03g02550.1                                                       145   5e-35
Glyma01g34610.1                                                        60   2e-09

>Glyma09g40460.1 
          Length = 363

 Score =  296 bits (758), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 139/176 (78%), Positives = 156/176 (88%)

Query: 45  PTIIYNVPSRTGQDIPPGVIHSAAQSPNLAGVKECMGNDRVEQYTEKGIVVWSGNDDECH 104
           PTIIYNVP+RTGQDIPP VI + A+S NLAGVKEC+GNDR++QYT+ GIVVWSGNDD+CH
Sbjct: 188 PTIIYNVPARTGQDIPPHVIQTLAESANLAGVKECVGNDRIKQYTDDGIVVWSGNDDQCH 247

Query: 105 DARWSHGATGVISVASNLVPGLMRKLMIEGKDPALNSKLLPLIRWLFQEPNPIGLNTALA 164
           DARW +GATGVISV SNLVPGLMR+LM  G +P LNSKLLPLI WLF  PNPIGLNTALA
Sbjct: 248 DARWGYGATGVISVVSNLVPGLMRELMFGGVNPTLNSKLLPLIDWLFHMPNPIGLNTALA 307

Query: 165 QLGVVRPVFRLPYVPLPLPKRIEFVNLVKAIGRENFVGEQDVQVLEDDDFMLVGRY 220
           QLGVVRPVFRLP+VPLP+ KRIEF NLVK IGRE+FVG +DV+VL+DDDF LV RY
Sbjct: 308 QLGVVRPVFRLPFVPLPVDKRIEFANLVKEIGREHFVGNKDVEVLDDDDFFLVSRY 363


>Glyma18g45380.1 
          Length = 363

 Score =  293 bits (749), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 137/176 (77%), Positives = 156/176 (88%)

Query: 45  PTIIYNVPSRTGQDIPPGVIHSAAQSPNLAGVKECMGNDRVEQYTEKGIVVWSGNDDECH 104
           PTIIYNVP+RTGQDIPP VI + A+S NLAGVKEC+GNDR++QYT+ GIVVWSGNDD+CH
Sbjct: 188 PTIIYNVPARTGQDIPPHVIQTLAESVNLAGVKECVGNDRIKQYTDDGIVVWSGNDDQCH 247

Query: 105 DARWSHGATGVISVASNLVPGLMRKLMIEGKDPALNSKLLPLIRWLFQEPNPIGLNTALA 164
           DARW +GATGV+SVASNLVPGLMR+LM  G +P LNSKLLPLI WLF  PNPIGLNTALA
Sbjct: 248 DARWGYGATGVVSVASNLVPGLMRELMFGGVNPTLNSKLLPLIDWLFHMPNPIGLNTALA 307

Query: 165 QLGVVRPVFRLPYVPLPLPKRIEFVNLVKAIGRENFVGEQDVQVLEDDDFMLVGRY 220
           QLGV+RPVFRLP+VPLP+ KRIEF NLVK IGRE+FVG + V+VL+DDDF LV RY
Sbjct: 308 QLGVIRPVFRLPFVPLPVDKRIEFANLVKEIGREHFVGNKVVEVLDDDDFFLVSRY 363


>Glyma03g02530.1 
          Length = 365

 Score =  261 bits (668), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 120/176 (68%), Positives = 147/176 (83%)

Query: 45  PTIIYNVPSRTGQDIPPGVIHSAAQSPNLAGVKECMGNDRVEQYTEKGIVVWSGNDDECH 104
           P IIYN+P+RT QDIPP V+ + AQ+PNL G+KEC+GN+R++ YT++GIVVW+G D   H
Sbjct: 190 PIIIYNIPTRTNQDIPPSVVQNLAQNPNLVGLKECVGNERIKHYTDQGIVVWTGIDKTSH 249

Query: 105 DARWSHGATGVISVASNLVPGLMRKLMIEGKDPALNSKLLPLIRWLFQEPNPIGLNTALA 164
           DARW  GA GV SVASNL+PGLMR+LM EGK+  LNSK++PL  WL QEP PI LNTALA
Sbjct: 250 DARWDFGAVGVQSVASNLIPGLMRELMFEGKNATLNSKVIPLFDWLSQEPVPIALNTALA 309

Query: 165 QLGVVRPVFRLPYVPLPLPKRIEFVNLVKAIGRENFVGEQDVQVLEDDDFMLVGRY 220
           QLGV++PVFRLP +PL + KRIEFV LVK IGRE+FVG++DVQVL+DDDF+ VGRY
Sbjct: 310 QLGVIKPVFRLPLLPLLVEKRIEFVMLVKEIGREHFVGDKDVQVLDDDDFITVGRY 365


>Glyma03g02550.1 
          Length = 150

 Score =  145 bits (365), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 72/135 (53%), Positives = 95/135 (70%), Gaps = 18/135 (13%)

Query: 74  AGVKECMGNDRVEQYTEKGIVVWSGNDDECHDARWSHGATGVISVASNLVPGLMRKLMIE 133
            G K+C+ + +   +  +GI VWS ND+ECHDARW  GA         ++ GL+R+LM E
Sbjct: 11  CGKKDCLKDSK---FWCEGIGVWSANDEECHDARWDFGA---------IISGLIRELMFE 58

Query: 134 GKDPALNSKLLPLIRWLFQEPNPIGLNTALAQLGVVRPVFRLPYVPLPLPKRIEFVNLVK 193
           GK+  +NSKL+P   WL  EPNPI LNTALAQLGV++P+FRLP+VPLP+ KR+E      
Sbjct: 59  GKNDTMNSKLMPQFYWLCLEPNPIPLNTALAQLGVIKPIFRLPHVPLPVEKRME------ 112

Query: 194 AIGRENFVGEQDVQV 208
            IGRE+FVGE+DVQ+
Sbjct: 113 QIGREHFVGEKDVQI 127


>Glyma01g34610.1 
          Length = 94

 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/102 (43%), Positives = 49/102 (48%), Gaps = 36/102 (35%)

Query: 45  PTIIYNVPSRTGQDIPPGVIHSAAQSPNLAGVKECMGNDRVEQYTEKGIVVWSGNDDECH 104
           P I+Y +PSRT QD                                KGIVVWS N     
Sbjct: 1   PCIMYYIPSRTAQD-------------------------------SKGIVVWSANG---- 25

Query: 105 DARWSHGATGVISVASNLVPGLMRKLMIEGKDPALNSKLLPL 146
            ARW  G  GV SV SNLVPGL R+LM EGK+  LNSKL+P 
Sbjct: 26  -ARWDFGVVGVQSVVSNLVPGLTRELMFEGKNDTLNSKLMPF 66