Jatropha Genome Database

JcCA0308281.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0308281.20 - phase: 0 
         (154 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma15g03790.1                                                       162   2e-40
Glyma13g41610.1                                                       151   2e-37
Glyma13g41610.2                                                       151   2e-37
Glyma11g11860.1                                                       151   3e-37
Glyma11g11860.2                                                       107   5e-24
Glyma12g04140.1                                                        48   4e-06

>Glyma15g03790.1 
          Length = 154

 Score =  162 bits (409), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 83/154 (53%), Positives = 100/154 (64%), Gaps = 5/154 (3%)

Query: 1   MATSLTNKT-SVTNQTLSLFRLSFNFIKSFXXXXXXXXXXXXXXXXXXXXXXXXXNLFEV 59
           MA++L+++  SV N      R S NFI++                          NLFEV
Sbjct: 1   MASALSSRVESVRNSPF--LRFSLNFIRALSSSSSSSSAVSSAENLKKSKRRKKKNLFEV 58

Query: 60  AQFLPNWGIGYHMAKSHWKNVSYEITKINLYKDGRHGKAWGIAYKDGAPAAETPKKISGV 119
           AQFLPNWGIGYHMAK+HW  VSYEITKINLYKDGRHGKAWGIA+K+G P A+ PKKISGV
Sbjct: 59  AQFLPNWGIGYHMAKTHWNEVSYEITKINLYKDGRHGKAWGIAFKNGLPLADAPKKISGV 118

Query: 120 HKRCWRYIPSLTNALSLESKPISSNSNETAPKAE 153
           HKRCWRYIP++  A  LES    ++S ++  K E
Sbjct: 119 HKRCWRYIPNVVKA--LESSTNLTSSTDSGLKVE 150


>Glyma13g41610.1 
          Length = 178

 Score =  151 bits (382), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 64/79 (81%), Positives = 72/79 (91%)

Query: 56  LFEVAQFLPNWGIGYHMAKSHWKNVSYEITKINLYKDGRHGKAWGIAYKDGAPAAETPKK 115
           LFEVAQFLPNWGIGYHMAK+HW  VSYEITKINLYKDGRHGKAWG+A+K+G P A+ PKK
Sbjct: 84  LFEVAQFLPNWGIGYHMAKTHWNEVSYEITKINLYKDGRHGKAWGVAFKNGLPLADAPKK 143

Query: 116 ISGVHKRCWRYIPSLTNAL 134
           ISGVHKRCWRY+P++  AL
Sbjct: 144 ISGVHKRCWRYLPNVVKAL 162


>Glyma13g41610.2 
          Length = 152

 Score =  151 bits (382), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 64/79 (81%), Positives = 72/79 (91%)

Query: 56  LFEVAQFLPNWGIGYHMAKSHWKNVSYEITKINLYKDGRHGKAWGIAYKDGAPAAETPKK 115
           LFEVAQFLPNWGIGYHMAK+HW  VSYEITKINLYKDGRHGKAWG+A+K+G P A+ PKK
Sbjct: 58  LFEVAQFLPNWGIGYHMAKTHWNEVSYEITKINLYKDGRHGKAWGVAFKNGLPLADAPKK 117

Query: 116 ISGVHKRCWRYIPSLTNAL 134
           ISGVHKRCWRY+P++  AL
Sbjct: 118 ISGVHKRCWRYLPNVVKAL 136


>Glyma11g11860.1 
          Length = 153

 Score =  151 bits (381), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 65/93 (69%), Positives = 78/93 (83%)

Query: 55  NLFEVAQFLPNWGIGYHMAKSHWKNVSYEITKINLYKDGRHGKAWGIAYKDGAPAAETPK 114
           NLF+VAQFLPNWGIGYHMAK+HW  VSYEITKINLYKDGRHGKAWG+A+K+G P A+ PK
Sbjct: 53  NLFDVAQFLPNWGIGYHMAKTHWNEVSYEITKINLYKDGRHGKAWGVAFKNGLPLADAPK 112

Query: 115 KISGVHKRCWRYIPSLTNALSLESKPISSNSNE 147
           KISGVHKRCWRY+P++   L   +  +SS  ++
Sbjct: 113 KISGVHKRCWRYLPNVVKELESSTNLMSSADSD 145


>Glyma11g11860.2 
          Length = 119

 Score =  107 bits (267), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 46/58 (79%), Positives = 52/58 (89%)

Query: 55  NLFEVAQFLPNWGIGYHMAKSHWKNVSYEITKINLYKDGRHGKAWGIAYKDGAPAAET 112
           NLF+VAQFLPNWGIGYHMAK+HW  VSYEITKINLYKDGRHGKAWG+A+K+G+    T
Sbjct: 53  NLFDVAQFLPNWGIGYHMAKTHWNEVSYEITKINLYKDGRHGKAWGVAFKNGSFLLRT 110


>Glyma12g04140.1 
          Length = 68

 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 18/23 (78%), Positives = 21/23 (91%)

Query: 55 NLFEVAQFLPNWGIGYHMAKSHW 77
          NL +VA+FL NWGIGYHMAK+HW
Sbjct: 44 NLLDVAEFLSNWGIGYHMAKTHW 66