Jatropha Genome Database

JcCA0308171.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0308171.30 - phase: 0 /pseudo/partial
         (195 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma14g09690.1                                                       123   1e-28
Glyma17g35470.1                                                       122   3e-28
Glyma06g04820.2                                                       113   2e-25
Glyma06g04820.1                                                       113   2e-25
Glyma04g04740.1                                                       104   6e-23
Glyma06g04820.3                                                        90   1e-18

>Glyma14g09690.1 
          Length = 867

 Score =  123 bits (309), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 75/146 (51%), Positives = 88/146 (60%), Gaps = 4/146 (2%)

Query: 51  AKSVKTNRDEDDKXXXXXXXXXXXXXXXXXXXLSKWQLMAEQARQRREGGNEATSSSQSA 110
            KS+K N++ED+K                   LSKWQLMAEQA+Q+REGG +  S SQ A
Sbjct: 720 GKSIKVNKEEDEKMRTNAANVAARAAYGGDDMLSKWQLMAEQAKQKREGGVDVLSGSQPA 779

Query: 111 KDVGHNPRSTSGRNMKDNQEPEKXXXXX--XXXXXXNLGKNQVM--QISVARTISVKDVI 166
           KDV     STSGR+ KDNQE EK              LG++  M  Q  VAR+ISVKDVI
Sbjct: 780 KDVNRKFLSTSGRSTKDNQEGEKKGSSTFIASSVARKLGRSHAMALQTRVARSISVKDVI 839

Query: 167 AVLEREPQMSKSNLICRLHERTGSGA 192
           AVLEREPQMSKS L+ RL+ER  S A
Sbjct: 840 AVLEREPQMSKSPLMHRLYERIHSDA 865


>Glyma17g35470.1 
          Length = 856

 Score =  122 bits (306), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 74/144 (51%), Positives = 87/144 (60%), Gaps = 9/144 (6%)

Query: 51  AKSVKTNRDEDDKXXXXXXXXXXXXXXXXXXXLSKWQLMAEQARQRREGGNEATSSSQSA 110
            KS K N++ED+K                   +SKWQLMAEQA+Q+REGG + +S SQ A
Sbjct: 718 GKSTKVNKEEDEKMRTNAANVAARAAYGGDDMMSKWQLMAEQAKQKREGGVDVSSGSQPA 777

Query: 111 KDVGHNPRSTSGRNMKDNQEPEKXXXXXXXXXXXNLGKNQVM--QISVARTISVKDVIAV 168
           KDV     STSGR+ KDNQE EK            LG++  M  Q  VAR+ISVKDVIAV
Sbjct: 778 KDVNRKSLSTSGRSTKDNQEGEKKVARK-------LGRSHAMASQTRVARSISVKDVIAV 830

Query: 169 LEREPQMSKSNLICRLHERTGSGA 192
           LEREP MSKS LI RL+ER  S A
Sbjct: 831 LEREPHMSKSPLIHRLYERIHSDA 854


>Glyma06g04820.2 
          Length = 894

 Score =  113 bits (282), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/147 (48%), Positives = 87/147 (59%), Gaps = 9/147 (6%)

Query: 52  KSVKTNRDEDDKXXXXXXXXXXXXXXXXXXXLSKWQLMAEQARQR-REGGNEATSSSQSA 110
           K+ K N++ DDK                   LSKWQLMAEQARQ+ R GG +A+S SQ A
Sbjct: 754 KATKVNKEVDDKMRTNAANVAARAAVGGDDMLSKWQLMAEQARQKKRGGGMDASSGSQPA 813

Query: 111 KDVGHNPRSTSGRNMKDNQEPEKXXXXXXXXXXXNLGKNQVM--QISVARTISVKDVIAV 168
           KDV     STSGR+ KDNQ  EK             G++     Q S+AR+ISVKDVIAV
Sbjct: 814 KDVSQKSSSTSGRSTKDNQAREKKGAGRK------FGRSHATTPQNSIARSISVKDVIAV 867

Query: 169 LEREPQMSKSNLICRLHERTGSGAQTK 195
           LEREPQMSKS+L+ RL+ER  S   T+
Sbjct: 868 LEREPQMSKSSLLYRLYERIHSDTSTE 894


>Glyma06g04820.1 
          Length = 894

 Score =  113 bits (282), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/147 (48%), Positives = 87/147 (59%), Gaps = 9/147 (6%)

Query: 52  KSVKTNRDEDDKXXXXXXXXXXXXXXXXXXXLSKWQLMAEQARQR-REGGNEATSSSQSA 110
           K+ K N++ DDK                   LSKWQLMAEQARQ+ R GG +A+S SQ A
Sbjct: 754 KATKVNKEVDDKMRTNAANVAARAAVGGDDMLSKWQLMAEQARQKKRGGGMDASSGSQPA 813

Query: 111 KDVGHNPRSTSGRNMKDNQEPEKXXXXXXXXXXXNLGKNQVM--QISVARTISVKDVIAV 168
           KDV     STSGR+ KDNQ  EK             G++     Q S+AR+ISVKDVIAV
Sbjct: 814 KDVSQKSSSTSGRSTKDNQAREKKGAGRK------FGRSHATTPQNSIARSISVKDVIAV 867

Query: 169 LEREPQMSKSNLICRLHERTGSGAQTK 195
           LEREPQMSKS+L+ RL+ER  S   T+
Sbjct: 868 LEREPQMSKSSLLYRLYERIHSDTSTE 894


>Glyma04g04740.1 
          Length = 897

 Score =  104 bits (259), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 72/145 (49%), Positives = 86/145 (59%), Gaps = 1/145 (0%)

Query: 52  KSVKTNRDEDDKXXXXXXXXXXXXXXXXXXXLSKWQLMAEQARQR-REGGNEATSSSQSA 110
           K++K N++ DDK                   LSKWQLMAEQARQ+ R GG +A+S SQ A
Sbjct: 753 KAMKVNKEVDDKMRTNAANVAARAAVGGDDMLSKWQLMAEQARQKKRGGGMDASSGSQPA 812

Query: 111 KDVGHNPRSTSGRNMKDNQEPEKXXXXXXXXXXXNLGKNQVMQISVARTISVKDVIAVLE 170
           KDV H   STSGR+ KDNQ  EK                   Q S+AR+ISVKDVIAVLE
Sbjct: 813 KDVSHRSSSTSGRSTKDNQAREKKGPTSGAGRKFGRSHATTPQTSIARSISVKDVIAVLE 872

Query: 171 REPQMSKSNLICRLHERTGSGAQTK 195
           REPQMSKS+L+ RL+ER  S   T+
Sbjct: 873 REPQMSKSSLLYRLYERIHSDTSTE 897


>Glyma06g04820.3 
          Length = 877

 Score = 90.1 bits (222), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/147 (42%), Positives = 78/147 (53%), Gaps = 30/147 (20%)

Query: 52  KSVKTNRDEDDKXXXXXXXXXXXXXXXXXXXLSKWQLMAEQARQR-REGGNEATSSSQSA 110
           K+ K N++ DDK                   LSKWQLMAEQARQ+ R GG +A+S SQ A
Sbjct: 758 KATKVNKEVDDKMRTNAANVAARAAVGGDDMLSKWQLMAEQARQKKRGGGMDASSGSQPA 817

Query: 111 KDVGHNPRSTSGRNMKDNQEPEKXXXXXXXXXXXNLGKNQVM--QISVARTISVKDVIAV 168
           KD+       +GR                       G++     Q S+AR+ISVKDVIAV
Sbjct: 818 KDL------RAGRK---------------------FGRSHATTPQNSIARSISVKDVIAV 850

Query: 169 LEREPQMSKSNLICRLHERTGSGAQTK 195
           LEREPQMSKS+L+ RL+ER  S   T+
Sbjct: 851 LEREPQMSKSSLLYRLYERIHSDTSTE 877