Jatropha Genome Database

JcCA0308071.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0308071.10 - phase: 2 /pseudo/partial
         (304 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma17g13680.1                                                        84   2e-16
Glyma05g03020.1                                                        81   1e-15
Glyma05g03490.2                                                        54   2e-07
Glyma05g03490.1                                                        54   2e-07
Glyma17g14030.1                                                        54   3e-07
Glyma12g02530.1                                                        53   5e-07
Glyma11g10220.1                                                        51   2e-06
Glyma18g45220.1                                                        50   3e-06

>Glyma17g13680.1 
          Length = 499

 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/78 (58%), Positives = 53/78 (67%), Gaps = 2/78 (2%)

Query: 221 KPFEGESSIHVIDLGMSLGLPQGQQWRNLIHRLANNSSANPPKRLRITGVGNSGERLEAI 280
           + FEGES +HV+DLGMSLGL  G QWR LI  LAN +S    +RLRITGVG    RL+ I
Sbjct: 232 EAFEGESFVHVVDLGMSLGLRHGHQWRALIQSLANRASGERVRRLRITGVGLC-VRLQTI 290

Query: 281 GNELECYARCMGFNNLEF 298
           G EL  YA  +G  NLEF
Sbjct: 291 GEELSVYANNLGI-NLEF 307


>Glyma05g03020.1 
          Length = 476

 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/78 (57%), Positives = 51/78 (65%), Gaps = 2/78 (2%)

Query: 221 KPFEGESSIHVIDLGMSLGLPQGQQWRNLIHRLANNSSANPPKRLRITGVGNSGERLEAI 280
           + FEGES +HV+DLGMSLGL  G QWR LI  LA        +RLRITGVG   ERL+ I
Sbjct: 209 EAFEGESFVHVVDLGMSLGLRHGHQWRGLIQNLAGRVGGERVRRLRITGVGLC-ERLQTI 267

Query: 281 GNELECYARCMGFNNLEF 298
           G EL  YA  +G  NLEF
Sbjct: 268 GEELSVYANNLGV-NLEF 284


>Glyma05g03490.2 
          Length = 664

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 9/78 (11%)

Query: 221 KPFEGESSIHVIDLGMSLGLPQGQQWRNLIHRLANNSSANPPKRLRITGVGNSGERLEAI 280
           + FEG+  +H+ID  +  GL    QW  L   LA  S +NPP  +RITG+G S + L   
Sbjct: 380 RAFEGKDRVHIIDFDIKQGL----QWSGLFQSLA--SRSNPPTHVRITGIGESKQDLNET 433

Query: 281 GNELECYARCMGFNNLEF 298
           G  L  +A  +   NL F
Sbjct: 434 GERLAGFAEAL---NLPF 448


>Glyma05g03490.1 
          Length = 664

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 9/78 (11%)

Query: 221 KPFEGESSIHVIDLGMSLGLPQGQQWRNLIHRLANNSSANPPKRLRITGVGNSGERLEAI 280
           + FEG+  +H+ID  +  GL    QW  L   LA  S +NPP  +RITG+G S + L   
Sbjct: 380 RAFEGKDRVHIIDFDIKQGL----QWSGLFQSLA--SRSNPPTHVRITGIGESKQDLNET 433

Query: 281 GNELECYARCMGFNNLEF 298
           G  L  +A  +   NL F
Sbjct: 434 GERLAGFAEAL---NLPF 448


>Glyma17g14030.1 
          Length = 669

 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 50/96 (52%), Gaps = 15/96 (15%)

Query: 203 KFCHKSNLVILLQTXPYWKPFEGESSIHVIDLGMSLGLPQGQQWRNLIHRLANNSSANPP 262
           KF H ++  +LL      + FEG+  +H+ID  +  GL    QW +L   LA  S +NPP
Sbjct: 373 KFLHFTSNEMLL------RAFEGKDRVHIIDFDIKQGL----QWPSLFQSLA--SRSNPP 420

Query: 263 KRLRITGVGNSGERLEAIGNELECYARCMGFNNLEF 298
             +RITG+G S + L   G  L  +A  +   NL F
Sbjct: 421 IHVRITGIGESKQDLNETGERLAGFAEVL---NLPF 453


>Glyma12g02530.1 
          Length = 445

 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 16/154 (10%)

Query: 146 PLFLGRHFKELLLALFKGYLIGLCLFNHLGLSEFQLLQQKQLLVSHQRRMKPCAFSMKFC 205
           P  +G +F + L A      IG   ++ L      L Q +++  + Q         +KF 
Sbjct: 108 PERVGAYFAQALQARVLSSCIGS--YSPLTAKSVALTQSQRIFNAFQSYNSVSPL-VKFS 164

Query: 206 HKSNLVILLQTXPYWKPFEGESSIHVIDLGMSLGLPQGQQWRNLIHRLANNSSANPPKRL 265
           H +    + Q+       +GE S+H+IDL +     QG QW  L H LA+ S     + +
Sbjct: 165 HFTANQAIFQS------LDGEDSVHIIDLDIM----QGLQWPGLFHILASRSKKI--RSV 212

Query: 266 RITGVGNSGERLEAIGNELECYARCMGFNNLEFY 299
           RITG G+S E L++ G  L  +A  +G    EF+
Sbjct: 213 RITGFGSSSELLDSTGRRLADFASSLGL-PFEFF 245


>Glyma11g10220.1 
          Length = 442

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 69/154 (44%), Gaps = 16/154 (10%)

Query: 146 PLFLGRHFKELLLALFKGYLIGLCLFNHLGLSEFQLLQQKQLLVSHQRRMKPCAFSMKFC 205
           P  +G +F + L A      IG   ++ L      L Q +++  + Q         +KF 
Sbjct: 108 PERVGAYFAQALQARVVSSCIGS--YSPLTAKSVTLTQSQKIFNAFQSYNSVSPL-VKFS 164

Query: 206 HKSNLVILLQTXPYWKPFEGESSIHVIDLGMSLGLPQGQQWRNLIHRLANNSSANPPKRL 265
           H +    + Q        +GE  +H+IDL +     QG QW  L H LA+ S     + +
Sbjct: 165 HFTANQAIFQA------LDGEDRVHIIDLDIM----QGLQWPGLFHILASRSKKI--RSV 212

Query: 266 RITGVGNSGERLEAIGNELECYARCMGFNNLEFY 299
           RITG G+S E L++ G  L  +A  +G    EF+
Sbjct: 213 RITGFGSSSELLDSTGRRLADFASSLGL-PFEFF 245


>Glyma18g45220.1 
          Length = 551

 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 42/79 (53%), Gaps = 7/79 (8%)

Query: 221 KPFEGESSIHVIDLGMSLGLPQGQQWRNLIHRLANNSSANPPKRLRITGVGNSGERLEAI 280
           + FE E  +H+IDL +     QG QW  L H LA+     P   +R+TG+G S E LEA 
Sbjct: 283 EAFEREERVHIIDLDIM----QGLQWPGLFHILASRPGGAP--YVRLTGLGTSMEALEAT 336

Query: 281 GNELECYARCMGFNNLEFY 299
           G  L  +A  +G    EF+
Sbjct: 337 GKRLSDFANKLGL-PFEFF 354